RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 TRAV30A0A087WSZ9 112 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 PRAF2O60831 178 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 YIF1AO95070 293 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 PTTG1O95997 202 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 IL4P05112 153 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 CXCL3P19876 107 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 GUCA2BQ16661 112 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 ETFRF1Q6IPR1 90 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 C16orf54Q6UWD8 224 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 NOXA1Q86UR1 476 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 OR51G1Q8NGK1 321 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 DCANP1Q8TF63 244 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 RNF125Q96EQ8 232 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 RAB40CQ96S21 281 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 SPAG8Q99932 426 aaPredicted RBP7.3□□□□□ -1.24
CLN3-220ENST00000566040 OR5AC2Q9NZP5 309 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 LSM5Q9Y4Y9 91 aaKnown RBP7.3□□□□□ -1.24
CLN3-220ENST00000566040 ALG5Q9Y673 324 aa7.3□□□□□ -1.24
CLN3-220ENST00000566040 FAM24AA6NFZ4 105 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 FAM25EA8MYX2 175 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 K7EQG2 157 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 GOSR2O14653 212 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 BUB3O43684 328 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 P2RY1P47900 373 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 RAB11AP62491 216 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 DLK1P80370 383 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 OR2F1Q13607 317 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 HAGHQ16775 308 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 VWC2Q2TAL6 325 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 OR8G2PQ6IF36 304 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 TCF24Q7RTU0 167 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 TMEM144Q7Z5S9 345 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 SLC35E1Q96K37 410 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 GINS3Q9BRX5 216 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 RNF126Q9BV68 326 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 MS4A6AQ9H2W1 248 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 MAP6D1Q9H9H5 199 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 RETNQ9HD89 108 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 LYRM2Q9NU23 88 aaPredicted RBP7.29□□□□□ -1.24
CLN3-220ENST00000566040 UBQLN2Q9UHD9 624 aa7.29□□□□□ -1.24
CLN3-220ENST00000566040 C5orf51A6NDU8 294 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 OR11H12B2RN74 326 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 FNDC10F2Z333 226 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 SOCS3O14543 225 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 DEDDO75618 318 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 HNRNPCP07910 306 aaKnown RBP eCLIP7.28□□□□□ -1.24
CLN3-220ENST00000566040 RD3LP0DJH9 198 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 DEFA1P59665 94 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 DEFA3P59666 94 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 RRAS2P62070 204 aaPredicted RBP7.28□□□□□ -1.24
CLN3-220ENST00000566040 PATE2Q6UY27 113 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 GBGT1Q8N5D6 347 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 OR11H7Q8NGC8 314 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 MGST2Q99735 147 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 NMES1Q9C002 83 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 SRD5A3Q9H8P0 318 aa7.28□□□□□ -1.24
CLN3-220ENST00000566040 PAIP2BQ9ULR5 123 aaKnown RBP7.28□□□□□ -1.24
CLN3-220ENST00000566040 IGKV3-7A0A075B6H7 116 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 ZFP92A6NM28 416 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 G3V3Q6 166 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 CST7O76096 145 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 LINC00869P0C866 280 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 NPPCP23582 126 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 DCTN2Q13561 401 aaKnown RBP7.27□□□□□ -1.25
CLN3-220ENST00000566040 OXA1LQ15070 435 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 MORN5Q5VZ52 161 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 GTSCR1Q86UQ5 136 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 APRG1Q8IVJ8 170 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 TMEM252Q8N6L7 170 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 Q8WTZ3 238 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 METTL26Q96S19 204 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 FAM110AQ9BQ89 295 aa7.27□□□□□ -1.25
CLN3-220ENST00000566040 GPN1Q9HCN4 374 aaPredicted RBP7.27□□□□□ -1.25
CLN3-220ENST00000566040 TRAV2A0A0B4J234 112 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 MRPS12O15235 138 aaKnown RBP7.26□□□□□ -1.25
CLN3-220ENST00000566040 GIG44P09565 113 aaPredicted RBP7.26□□□□□ -1.25
CLN3-220ENST00000566040 LYL1P12980 280 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 TFPI2P48307 235 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 EIF2B2P49770 351 aaKnown RBP7.26□□□□□ -1.25
CLN3-220ENST00000566040 PLP1P60201 277 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 S100A10P60903 97 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 LYZP61626 148 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 SLC38A11Q08AI6 406 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 FCN2Q15485 313 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 Q5BKY6 102 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 RBPMS2Q6ZRY4 209 aaKnown RBP7.26□□□□□ -1.25
CLN3-220ENST00000566040 CYP2G1PQ6ZSU1 146 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 MGAT4CQ9UBM8 478 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 SLC45A2Q9UMX9 530 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 WDR83OSQ9Y284 106 aa7.26□□□□□ -1.25
CLN3-220ENST00000566040 PLECQ15149 4684 aaKnown RBP7.26□□□□□ -1.25
CLN3-220ENST00000566040 DNAH1Q9P2D7 4330 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 OR4C46A6NHA9 309 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 H3BRN7 92 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 SULT1A1P50225 295 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 DEFB1P60022 68 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 RPP30P78346 268 aaKnown RBP7.25□□□□□ -1.25
CLN3-220ENST00000566040 PRR20EP86478 221 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 PRR20CP86479 221 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 PRR20DP86480 221 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms