RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 LINC00854A0A1B0GVQ3 168 aa15.19■□□□□ 0.02
CLN3-219ENST00000565778 FAM90A26D6RGX4 464 aa15.19■□□□□ 0.02
CLN3-219ENST00000565778 ATF4P18848 351 aaPredicted RBP15.19■□□□□ 0.02
CLN3-219ENST00000565778 PBDC1Q9BVG4 233 aa15.19■□□□□ 0.02
CLN3-219ENST00000565778 NUPR2A6NF83 97 aa15.18■□□□□ 0.02
CLN3-219ENST00000565778 NAP1L6A6NFF2 107 aa15.18■□□□□ 0.02
CLN3-219ENST00000565778 KNCNA6PVL3 124 aa15.18■□□□□ 0.02
CLN3-219ENST00000565778 WRBO00258 174 aa15.18■□□□□ 0.02
CLN3-219ENST00000565778 BUB3O43684 328 aa15.18■□□□□ 0.02
CLN3-219ENST00000565778 RPP30P78346 268 aaKnown RBP15.18■□□□□ 0.02
CLN3-219ENST00000565778 GGNBP1Q5YKI7 109 aa15.18■□□□□ 0.02
CLN3-219ENST00000565778 MAGT1Q9H0U3 335 aa15.18■□□□□ 0.02
CLN3-219ENST00000565778 PFDN2Q9UHV9 154 aa15.18■□□□□ 0.02
CLN3-219ENST00000565778 RYR2Q92736 4967 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 SACSQ9NZJ4 4579 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 SYNGR2O43760 224 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 FABP1P07148 127 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 UBE2MP61081 183 aaKnown RBP15.17■□□□□ 0.02
CLN3-219ENST00000565778 ZNF90Q03938 601 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 PSMG4Q5JS54 123 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 ACTL10Q5JWF8 245 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 CEMP1Q6PRD7 247 aaPredicted RBP15.17■□□□□ 0.02
CLN3-219ENST00000565778 SIGLEC15Q6ZMC9 328 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 RNF125Q96EQ8 232 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 CIB3Q96Q77 187 aaPredicted RBP15.17■□□□□ 0.02
CLN3-219ENST00000565778 LYSTQ99698 3801 aa15.17■□□□□ 0.02
CLN3-219ENST00000565778 C9orf170A2RU37 121 aa15.16■□□□□ 0.02
CLN3-219ENST00000565778 CENPXA8MT69 81 aa15.16■□□□□ 0.02
CLN3-219ENST00000565778 SNRPGP15A8MWD9 76 aa15.16■□□□□ 0.02
CLN3-219ENST00000565778 TRPT1Q86TN4 253 aaKnown RBP15.16■□□□□ 0.02
CLN3-219ENST00000565778 RAB40CQ96S21 281 aa15.16■□□□□ 0.02
CLN3-219ENST00000565778 FLVCR2Q9UPI3 526 aa15.16■□□□□ 0.02
CLN3-219ENST00000565778 IGKV1D-37A0A075B6S9 117 aa15.15■□□□□ 0.02
CLN3-219ENST00000565778 NDUFB6O95139 128 aa15.15■□□□□ 0.02
CLN3-219ENST00000565778 SNRPD3P62318 126 aaKnown RBP15.15■□□□□ 0.02
CLN3-219ENST00000565778 MORN3Q6PF18 240 aaPredicted RBP15.15■□□□□ 0.02
CLN3-219ENST00000565778 NRN1Q9NPD7 142 aa15.15■□□□□ 0.02
CLN3-219ENST00000565778 KLK5Q9Y337 293 aaPredicted RBP15.15■□□□□ 0.02
CLN3-219ENST00000565778 ADAP1O75689 374 aa15.14■□□□□ 0.01
CLN3-219ENST00000565778 SPP1P10451 314 aa15.14■□□□□ 0.01
CLN3-219ENST00000565778 NUP62P37198 522 aaPredicted RBP15.14■□□□□ 0.01
CLN3-219ENST00000565778 LYZP61626 148 aa15.14■□□□□ 0.01
CLN3-219ENST00000565778 OR2F1Q13607 317 aa15.14■□□□□ 0.01
CLN3-219ENST00000565778 TMEM41BQ5BJD5 291 aa15.14■□□□□ 0.01
CLN3-219ENST00000565778 SPANXN5Q5MJ07 72 aa15.14■□□□□ 0.01
CLN3-219ENST00000565778 OR8G2PQ6IF36 304 aa15.14■□□□□ 0.01
CLN3-219ENST00000565778 DEFB4AO15263 64 aa15.13■□□□□ 0.01
CLN3-219ENST00000565778 IFNA21P01568 189 aa15.13■□□□□ 0.01
CLN3-219ENST00000565778 COQ8AQ8NI60 647 aa15.13■□□□□ 0.01
CLN3-219ENST00000565778 C11orf45Q8TAV5 145 aa15.13■□□□□ 0.01
CLN3-219ENST00000565778 PHLDA1Q8WV24 401 aaPredicted RBP15.13■□□□□ 0.01
CLN3-219ENST00000565778 PPP1R14BQ96C90 147 aa15.13■□□□□ 0.01
CLN3-219ENST00000565778 TRGV9Q99603 122 aa15.13■□□□□ 0.01
CLN3-219ENST00000565778 SDHCQ99643 169 aaPredicted RBP15.13■□□□□ 0.01
CLN3-219ENST00000565778 LY6G6CO95867 125 aa15.12■□□□□ 0.01
CLN3-219ENST00000565778 OR4E1P0C645 316 aa15.12■□□□□ 0.01
CLN3-219ENST00000565778 SEPSECSQ9HD40 501 aaKnown RBP15.12■□□□□ 0.01
CLN3-219ENST00000565778 STRAPQ9Y3F4 350 aaKnown RBP15.12■□□□□ 0.01
CLN3-219ENST00000565778 GIG44P09565 113 aaPredicted RBP15.11■□□□□ 0.01
CLN3-219ENST00000565778 NANOS2P60321 138 aaKnown RBP15.11■□□□□ 0.01
CLN3-219ENST00000565778 C4orf46Q504U0 113 aa15.11■□□□□ 0.01
CLN3-219ENST00000565778 MFFQ9GZY8 342 aa15.11■□□□□ 0.01
CLN3-219ENST00000565778 C11orf68Q9H3H3 251 aaKnown RBP15.11■□□□□ 0.01
CLN3-219ENST00000565778 NDUFA13Q9P0J0 144 aa15.11■□□□□ 0.01
CLN3-219ENST00000565778 FBXL17Q9UF56 701 aa15.11■□□□□ 0.01
CLN3-219ENST00000565778 IGKV1OR2-108A0A075B7D4 117 aa15.1■□□□□ 0.01
CLN3-219ENST00000565778 H3BP45 60 aa15.1■□□□□ 0.01
CLN3-219ENST00000565778 IL7P13232 177 aa15.1■□□□□ 0.01
CLN3-219ENST00000565778 POLR2GP62487 172 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLN3-219ENST00000565778 ID3Q02535 119 aa15.1■□□□□ 0.01
CLN3-219ENST00000565778 C1orf194Q5T5A4 169 aa15.1■□□□□ 0.01
CLN3-219ENST00000565778 THAP8Q8NA92 274 aa15.1■□□□□ 0.01
CLN3-219ENST00000565778 C7orf50Q9BRJ6 194 aaKnown RBP15.1■□□□□ 0.01
CLN3-219ENST00000565778 CLEC5AQ9NY25 188 aa15.1■□□□□ 0.01
CLN3-219ENST00000565778 CFDP00746 253 aaPredicted RBP15.09■□□□□ 0.01
CLN3-219ENST00000565778 ANXA7P20073 488 aaKnown RBP15.09■□□□□ 0.01
CLN3-219ENST00000565778 C4BPBP20851 252 aa15.09■□□□□ 0.01
CLN3-219ENST00000565778 NKX2-1P43699 371 aaPredicted RBP15.09■□□□□ 0.01
CLN3-219ENST00000565778 NUTF2P61970 127 aaKnown RBP15.09■□□□□ 0.01
CLN3-219ENST00000565778 OR8I2Q8N0Y5 310 aa15.09■□□□□ 0.01
CLN3-219ENST00000565778 LINC00476Q8WZB0 136 aa15.09■□□□□ 0.01
CLN3-219ENST00000565778 LINC00052Q96N35 136 aa15.09■□□□□ 0.01
CLN3-219ENST00000565778 PSENENQ9NZ42 101 aa15.09■□□□□ 0.01
CLN3-219ENST00000565778 DNAH1Q9P2D7 4330 aa15.08■□□□□ 0
CLN3-219ENST00000565778 PRSS46E5RG02 174 aa15.08■□□□□ 0
CLN3-219ENST00000565778 ID1P41134 155 aa15.08■□□□□ 0
CLN3-219ENST00000565778 AGRNO00468 2067 aa15.07■□□□□ 0
CLN3-219ENST00000565778 H3BMM0 161 aa15.07■□□□□ 0
CLN3-219ENST00000565778 BTCP35070 178 aa15.07■□□□□ 0
CLN3-219ENST00000565778 AKR1C1Q04828 323 aa15.07■□□□□ 0
CLN3-219ENST00000565778 CNPY1Q3B7I2 92 aa15.07■□□□□ 0
CLN3-219ENST00000565778 MIFP14174 115 aa15.06■□□□□ 0
CLN3-219ENST00000565778 ORM2P19652 201 aa15.06■□□□□ 0
CLN3-219ENST00000565778 Q8NAQ8 132 aa15.06■□□□□ 0
CLN3-219ENST00000565778 BPIFCQ8NFQ6 507 aa15.06■□□□□ 0
CLN3-219ENST00000565778 OR4D5Q8NGN0 318 aa15.06■□□□□ 0
CLN3-219ENST00000565778 C1QTNF4Q9BXJ3 329 aa15.06■□□□□ 0
CLN3-219ENST00000565778 WDR12Q9GZL7 423 aaKnown RBP15.06■□□□□ 0
CLN3-219ENST00000565778 TBC1D24Q9ULP9 559 aa15.06■□□□□ 0
CLN3-219ENST00000565778 IGHV4-28A0A0C4DH34 117 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms