RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 ZNF785A8K8V0 405 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 FNDC10F2Z333 226 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 CCNKO75909 580 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 CST7O76096 145 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 S100A11P31949 105 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 RPL11P62913 178 aaKnown RBP12.06□□□□□ -0.48
RAB40C-208ENST00000564703 HBG1P69891 147 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 HBG2P69892 147 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 TMEM61Q8N0U2 210 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 TMEM252Q8N6L7 170 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 THAP8Q8NA92 274 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 PPP1R1CQ8WVI7 109 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 WDR89Q96FK6 387 aaPredicted RBP12.06□□□□□ -0.48
RAB40C-208ENST00000564703 PBDC1Q9BVG4 233 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 RABAC1Q9UI14 185 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 SMAD5-AS1Q9Y6J3 95 aa12.06□□□□□ -0.48
RAB40C-208ENST00000564703 HNRNPCP07910 306 aaKnown RBP eCLIP12.05□□□□□ -0.48
RAB40C-208ENST00000564703 S100A7P31151 101 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 SULT1A1P50225 295 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 PAFAH1B2P68402 229 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 ZNF90Q03938 601 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 SLC38A11Q08AI6 406 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 OR2F1Q13607 317 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 LILRB2Q8N423 598 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 TMEM217Q8N7C4 229 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 BPIFCQ8NFQ6 507 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 RNF125Q96EQ8 232 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 ZNF414Q96IQ9 312 aa12.05□□□□□ -0.48
RAB40C-208ENST00000564703 IGKV1D-37A0A075B6S9 117 aa12.04□□□□□ -0.48
RAB40C-208ENST00000564703 CRYBB3P26998 211 aa12.04□□□□□ -0.48
RAB40C-208ENST00000564703 P2RY1P47900 373 aa12.04□□□□□ -0.48
RAB40C-208ENST00000564703 EIF2B2P49770 351 aaKnown RBP12.04□□□□□ -0.48
RAB40C-208ENST00000564703 RAB31Q13636 194 aa12.04□□□□□ -0.48
RAB40C-208ENST00000564703 ATP6V1FQ16864 119 aa12.04□□□□□ -0.48
RAB40C-208ENST00000564703 TEPPQ6URK8 271 aa12.04□□□□□ -0.48
RAB40C-208ENST00000564703 PPP1R14BQ96C90 147 aa12.04□□□□□ -0.48
RAB40C-208ENST00000564703 RNF2Q99496 336 aa12.04□□□□□ -0.48
RAB40C-208ENST00000564703 SPAG8Q99932 426 aaPredicted RBP12.04□□□□□ -0.48
RAB40C-208ENST00000564703 C11orf1Q9H5F2 150 aa12.04□□□□□ -0.48
RAB40C-208ENST00000564703 IGKV1OR2-108A0A075B7D4 117 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 IGHV3-66A0A0C4DH42 116 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 TSPAN4O14817 238 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 MPC2O95563 127 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 APOHP02749 345 aaPredicted RBP12.03□□□□□ -0.48
RAB40C-208ENST00000564703 NUP62P37198 522 aaPredicted RBP12.03□□□□□ -0.48
RAB40C-208ENST00000564703 LYZP61626 148 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 SELENOTP62341 195 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 ARL16Q0P5N6 197 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 FCN2Q15485 313 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 TCF24Q7RTU0 167 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 THAP6Q8TBB0 222 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 ST8SIA2Q92186 375 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 VSIRQ9H7M9 311 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 OR5AC2Q9NZP5 309 aa12.03□□□□□ -0.48
RAB40C-208ENST00000564703 LSM4Q9Y4Z0 139 aaKnown RBP12.03□□□□□ -0.48
RAB40C-208ENST00000564703 IGSF23A1L1A6 192 aa12.02□□□□□ -0.49
RAB40C-208ENST00000564703 OR4C46A6NHA9 309 aa12.02□□□□□ -0.49
RAB40C-208ENST00000564703 DNASE2O00115 360 aaPredicted RBP12.02□□□□□ -0.49
RAB40C-208ENST00000564703 DFFBO76075 338 aa12.02□□□□□ -0.49
RAB40C-208ENST00000564703 CXCL3P19876 107 aa12.02□□□□□ -0.49
RAB40C-208ENST00000564703 AP2S1P53680 142 aaPredicted RBP12.02□□□□□ -0.49
RAB40C-208ENST00000564703 CD81P60033 236 aa12.02□□□□□ -0.49
RAB40C-208ENST00000564703 USF2Q15853 346 aaPredicted RBP12.02□□□□□ -0.49
RAB40C-208ENST00000564703 CYP2G1PQ6ZSU1 146 aa12.02□□□□□ -0.49
RAB40C-208ENST00000564703 NEURL2Q9BR09 285 aa12.02□□□□□ -0.49
RAB40C-208ENST00000564703 TUBA4BQ9H853 241 aa12.02□□□□□ -0.49
RAB40C-208ENST00000564703 UQCC1Q9NVA1 299 aa12.02□□□□□ -0.49
RAB40C-208ENST00000564703 CMYA5Q8N3K9 4069 aa12.01□□□□□ -0.49
RAB40C-208ENST00000564703 IGKV3-7A0A075B6H7 116 aa12.01□□□□□ -0.49
RAB40C-208ENST00000564703 H0YIZ8 118 aa12.01□□□□□ -0.49
RAB40C-208ENST00000564703 CMC4P56277 68 aaPredicted RBP12.01□□□□□ -0.49
RAB40C-208ENST00000564703 FGL1Q08830 312 aa12.01□□□□□ -0.49
RAB40C-208ENST00000564703 S100A7AQ86SG5 101 aa12.01□□□□□ -0.49
RAB40C-208ENST00000564703 Q8N1Y9 231 aa12.01□□□□□ -0.49
RAB40C-208ENST00000564703 ASB13Q8WXK3 278 aa12.01□□□□□ -0.49
RAB40C-208ENST00000564703 RNF126Q9BV68 326 aa12.01□□□□□ -0.49
RAB40C-208ENST00000564703 HELTA6NFD8 242 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 CD7P09564 240 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 ORM2P19652 201 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 TFPI2P48307 235 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 EWSR1Q01844 656 aaKnown RBP eCLIP12□□□□□ -0.491e-6■■■■□ 19.5
RAB40C-208ENST00000564703 NHLH2Q02577 135 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 BAXQ07812 192 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 GBGT1Q8N5D6 347 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 OR11H7Q8NGC8 314 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 TMEM147Q9BVK8 224 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 U3KQE9 123 aa12□□□□□ -0.49
RAB40C-208ENST00000564703 MEGF8Q7Z7M0 2845 aa11.99□□□□□ -0.49
RAB40C-208ENST00000564703 OR11H12B2RN74 326 aa11.99□□□□□ -0.49
RAB40C-208ENST00000564703 GATA2P23769 480 aaPredicted RBP11.99□□□□□ -0.49
RAB40C-208ENST00000564703 RAP2BP61225 183 aa11.99□□□□□ -0.49
RAB40C-208ENST00000564703 FAM90A2PQ658T7 463 aa11.99□□□□□ -0.49
RAB40C-208ENST00000564703 ZNF546Q86UE3 836 aa11.99□□□□□ -0.49
RAB40C-208ENST00000564703 WFDC3Q8IUB2 231 aa11.99□□□□□ -0.49
RAB40C-208ENST00000564703 OR1B1Q8NGR6 318 aa11.99□□□□□ -0.49
RAB40C-208ENST00000564703 MBD2Q9UBB5 411 aa11.99□□□□□ -0.49
RAB40C-208ENST00000564703 AGPAT2O15120 278 aa11.98□□□□□ -0.49
RAB40C-208ENST00000564703 BUB3O43684 328 aa11.98□□□□□ -0.49
RAB40C-208ENST00000564703 HYPMO75409 117 aa11.98□□□□□ -0.49
RAB40C-208ENST00000564703 GIPP09681 153 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms