RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 JTBO76095 146 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 PSG1P11464 419 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 ZNF90Q03938 601 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 OR51G1Q8NGK1 321 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 TMEM190Q8WZ59 177 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 ZNF414Q96IQ9 312 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 NPCDR1Q9BY65 106 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 KCNIP2Q9NS61 270 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 PUS1Q9Y606 427 aaKnown RBP eCLIP15.8■□□□□ 0.12
CLN3-212ENST00000564574 IGHV3-35A0A0C4DH35 117 aa15.79■□□□□ 0.12
CLN3-212ENST00000564574 OPCMLQ14982 345 aa15.79■□□□□ 0.12
CLN3-212ENST00000564574 TOMM20LQ6UXN7 152 aa15.79■□□□□ 0.12
CLN3-212ENST00000564574 C9orf62Q8N4C0 152 aa15.79■□□□□ 0.12
CLN3-212ENST00000564574 ZNF709Q8N972 641 aa15.79■□□□□ 0.12
CLN3-212ENST00000564574 GGTLC1Q9BX51 225 aa15.79■□□□□ 0.12
CLN3-212ENST00000564574 SLC45A2Q9UMX9 530 aa15.79■□□□□ 0.12
CLN3-212ENST00000564574 UFC1Q9Y3C8 167 aa15.79■□□□□ 0.12
CLN3-212ENST00000564574 YIF1AO95070 293 aa15.78■□□□□ 0.12
CLN3-212ENST00000564574 C4BPBP20851 252 aa15.78■□□□□ 0.12
CLN3-212ENST00000564574 RPL29P47914 159 aaKnown RBP15.78■□□□□ 0.12
CLN3-212ENST00000564574 ELLP55199 621 aaPredicted RBP15.78■□□□□ 0.12
CLN3-212ENST00000564574 SYNJ2BPP57105 145 aa15.78■□□□□ 0.12
CLN3-212ENST00000564574 RPL7L1Q6DKI1 246 aaKnown RBP15.78■□□□□ 0.12
CLN3-212ENST00000564574 LINC00482Q8N8I6 264 aa15.78■□□□□ 0.12
CLN3-212ENST00000564574 DLX4Q92988 240 aaPredicted RBP15.78■□□□□ 0.12
CLN3-212ENST00000564574 PPP1R14BQ96C90 147 aa15.78■□□□□ 0.12
CLN3-212ENST00000564574 GINS3Q9BRX5 216 aa15.78■□□□□ 0.12
CLN3-212ENST00000564574 ZFAND3Q9H8U3 227 aa15.78■□□□□ 0.12
CLN3-212ENST00000564574 CYTL1Q9NRR1 136 aa15.78■□□□□ 0.12
CLN3-212ENST00000564574 PEMTQ9UBM1 199 aa15.78■□□□□ 0.12
CLN3-212ENST00000564574 WI2-2373I1.2A0A1W2PRP0 233 aa15.77■□□□□ 0.12
CLN3-212ENST00000564574 A8MWP6 167 aa15.77■□□□□ 0.12
CLN3-212ENST00000564574 TSPAN15O95858 294 aa15.77■□□□□ 0.12
CLN3-212ENST00000564574 IL4P05112 153 aa15.77■□□□□ 0.12
CLN3-212ENST00000564574 PXDC1Q5TGL8 231 aa15.77■□□□□ 0.12
CLN3-212ENST00000564574 RNF125Q96EQ8 232 aa15.77■□□□□ 0.12
CLN3-212ENST00000564574 RCC1LQ96I51 464 aaKnown RBP15.77■□□□□ 0.12
CLN3-212ENST00000564574 TIMM9Q9Y5J7 89 aa15.77■□□□□ 0.12
CLN3-212ENST00000564574 ZNF320A2RRD8 509 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 K7EMT4 169 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 OVOL1O14753 267 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 PLP1P60201 277 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 EIF5AP63241 154 aaKnown RBP15.76■□□□□ 0.11
CLN3-212ENST00000564574 PRR20EP86478 221 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 PRR20CP86479 221 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 PRR20DP86480 221 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 PRR20BP86481 221 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 PRR20AP86496 221 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 UNQ9165/PRO28630Q6UXU0 137 aa15.76■□□□□ 0.11
CLN3-212ENST00000564574 WNK1Q9H4A3 2382 aa15.75■□□□□ 0.11
CLN3-212ENST00000564574 LINC00869P0C866 280 aa15.75■□□□□ 0.11
CLN3-212ENST00000564574 GATA2P23769 480 aaPredicted RBP15.75■□□□□ 0.11
CLN3-212ENST00000564574 LAMTOR1Q6IAA8 161 aa15.75■□□□□ 0.11
CLN3-212ENST00000564574 TMEM182Q6ZP80 229 aaPredicted RBP15.75■□□□□ 0.11
CLN3-212ENST00000564574 STPG3Q8N7X2 389 aa15.75■□□□□ 0.11
CLN3-212ENST00000564574 OR9G4Q8NGQ1 327 aa15.75■□□□□ 0.11
CLN3-212ENST00000564574 GNPNAT1Q96EK6 184 aaPredicted RBP15.75■□□□□ 0.11
CLN3-212ENST00000564574 PSMG3Q9BT73 122 aaPredicted RBP15.75■□□□□ 0.11
CLN3-212ENST00000564574 C20orf24Q9BUV8 137 aa15.75■□□□□ 0.11
CLN3-212ENST00000564574 ZNF471Q9BX82 626 aaPredicted RBP15.75■□□□□ 0.11
CLN3-212ENST00000564574 DAZ1Q9NQZ3 744 aaKnown RBP15.75■□□□□ 0.11
CLN3-212ENST00000564574 PXMP4Q9Y6I8 212 aa15.75■□□□□ 0.11
CLN3-212ENST00000564574 NKX2-5P52952 324 aaPredicted RBP15.74■□□□□ 0.11
CLN3-212ENST00000564574 LYZP61626 148 aa15.74■□□□□ 0.11
CLN3-212ENST00000564574 B2MP61769 119 aa15.74■□□□□ 0.11
CLN3-212ENST00000564574 MIC13Q5XKP0 118 aa15.74■□□□□ 0.11
CLN3-212ENST00000564574 Q6ZRG5 221 aa15.74■□□□□ 0.11
CLN3-212ENST00000564574 HSD17B11Q8NBQ5 300 aa15.74■□□□□ 0.11
CLN3-212ENST00000564574 RSG1Q9BU20 258 aa15.74■□□□□ 0.11
CLN3-212ENST00000564574 ARV1Q9H2C2 271 aa15.74■□□□□ 0.11
CLN3-212ENST00000564574 SLC39A9Q9NUM3 307 aa15.74■□□□□ 0.11
CLN3-212ENST00000564574 ATP6V0CP27449 155 aa15.73■□□□□ 0.11
CLN3-212ENST00000564574 S100A7P31151 101 aa15.73■□□□□ 0.11
CLN3-212ENST00000564574 USF2Q15853 346 aaPredicted RBP15.73■□□□□ 0.11
CLN3-212ENST00000564574 MARC2Q969Z3 335 aa15.73■□□□□ 0.11
CLN3-212ENST00000564574 METTL26Q96S19 204 aa15.73■□□□□ 0.11
CLN3-212ENST00000564574 ELOVL1Q9BW60 279 aa15.73■□□□□ 0.11
CLN3-212ENST00000564574 RABAC1Q9UI14 185 aa15.73■□□□□ 0.11
CLN3-212ENST00000564574 ANK2Q01484 3957 aa15.73■□□□□ 0.11
CLN3-212ENST00000564574 BOLA2-SMG1P6H3BVE0 249 aa15.72■□□□□ 0.11
CLN3-212ENST00000564574 HNRNPCP07910 306 aaKnown RBP eCLIP15.72■□□□□ 0.11
CLN3-212ENST00000564574 S100A7AQ86SG5 101 aa15.72■□□□□ 0.11
CLN3-212ENST00000564574 SLC51BQ86UW2 128 aa15.72■□□□□ 0.11
CLN3-212ENST00000564574 WFDC9Q8NEX5 89 aa15.72■□□□□ 0.11
CLN3-212ENST00000564574 OR1L4Q8NGR5 311 aa15.72■□□□□ 0.11
CLN3-212ENST00000564574 STOML3Q8TAV4 291 aa15.72■□□□□ 0.11
CLN3-212ENST00000564574 PBDC1Q9BVG4 233 aa15.72■□□□□ 0.11
CLN3-212ENST00000564574 MRPL27Q9P0M9 148 aaKnown RBP15.72■□□□□ 0.11
CLN3-212ENST00000564574 PFDN2Q9UHV9 154 aa15.72■□□□□ 0.11
CLN3-212ENST00000564574 IGHV3OR16-8A0A075B7F1 116 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 TMEM213A2RRL7 107 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 C2orf70A6NJV1 201 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 HYPMO75409 117 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 TPT1P13693 172 aaKnown RBP15.71■□□□□ 0.11
CLN3-212ENST00000564574 ORM2P19652 201 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 NPPCP23582 126 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 CRYBB3P26998 211 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 OR1B1Q8NGR6 318 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 OR2G3Q8NGZ4 309 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 NARS2Q96I59 477 aaKnown RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms