RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ZNF79Q15937 498 aa5.09□□□□□ -1.59
VPS4A-203ENST00000564399 IDNKQ5T6J7 187 aa5.09□□□□□ -1.59
VPS4A-203ENST00000564399 PRSS54Q6PEW0 395 aa5.09□□□□□ -1.59
VPS4A-203ENST00000564399 IGF2BP2-AS1Q96M15 143 aa5.09□□□□□ -1.59
VPS4A-203ENST00000564399 ABHD1Q96SE0 405 aa5.09□□□□□ -1.59
VPS4A-203ENST00000564399 WDR12Q9GZL7 423 aaKnown RBP5.09□□□□□ -1.59
VPS4A-203ENST00000564399 PFDN2Q9UHV9 154 aa5.09□□□□□ -1.59
VPS4A-203ENST00000564399 A0A0B4J293 547 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 A0A0J9YX75 114 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 A0A1W2PPQ1 181 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 CBY3A6NI87 242 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 EBAG9O00559 213 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 ATG12O94817 140 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 IGKV1-5P01602 117 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 SLC25A4P12235 298 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 HLA-DMAP28067 261 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 SDC2P34741 201 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 HRH1P35367 487 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 NUP62P37198 522 aaPredicted RBP5.08□□□□□ -1.6
VPS4A-203ENST00000564399 HSPA13P48723 471 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 PAX9P55771 341 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 SCAND1P57086 179 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 OR5I1Q13606 314 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 CDPF1Q6NVV7 123 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 OR51G1Q8NGK1 321 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 RNASE11Q8TAA1 199 aaKnown RBP5.08□□□□□ -1.6
VPS4A-203ENST00000564399 GNPNAT1Q96EK6 184 aaPredicted RBP5.08□□□□□ -1.6
VPS4A-203ENST00000564399 C17orf77Q96MU5 243 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 PBDC1Q9BVG4 233 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 RPRMQ9NS64 109 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 SSR3Q9UNL2 185 aa5.08□□□□□ -1.6
VPS4A-203ENST00000564399 FAT1Q14517 4588 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 ISLRO14498 428 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 TOMM40O96008 361 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 INSP01308 110 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 CLEC2LP0C7M8 214 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 PGAM2P15259 253 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 PSMB9P28065 219 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 HTR2BP41595 481 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 LINC00315P59091 139 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 ERVFC1-1P60608 527 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 ICAM4Q14773 271 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 ETFRF1Q6IPR1 90 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 Q6ZSN1 163 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 NPIPB3Q92617 1050 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 FCGR1BQ92637 280 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 PPP1R14BQ96C90 147 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 GPR146Q96CH1 333 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 RNF125Q96EQ8 232 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 RRNAD1Q96FB5 475 aaKnown RBP5.07□□□□□ -1.6
VPS4A-203ENST00000564399 ACY3Q96HD9 319 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 HEYLQ9NQ87 328 aaPredicted RBP5.07□□□□□ -1.6
VPS4A-203ENST00000564399 DOK5Q9P104 306 aa5.07□□□□□ -1.6
VPS4A-203ENST00000564399 TRAV26-1A0A087WT03 109 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 A0A0J9YY99 117 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 M0R2Z0 102 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 SOCS3O14543 225 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 PSG1P11464 419 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 HTN1P15515 57 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 NAT1P18440 290 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 AZU1P20160 251 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 TSPOP30536 169 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 AQP4P55087 323 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 KRTAP10-1P60331 282 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 B2MP61769 119 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 ESRGQ1W209 222 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 SPINK13Q1W4C9 94 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 TRIM16LQ309B1 348 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 BSXQ3C1V8 233 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 RNASE12Q5GAN4 147 aaKnown RBP5.06□□□□□ -1.6
VPS4A-203ENST00000564399 TMEM69Q5SWH9 247 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 LYSMD2Q8IV50 215 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 OR8I2Q8N0Y5 310 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 RNASEH2CQ8TDP1 164 aaKnown RBP5.06□□□□□ -1.6
VPS4A-203ENST00000564399 RXFP4Q8TDU9 374 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 S100A16Q96FQ6 103 aaKnown RBP5.06□□□□□ -1.6
VPS4A-203ENST00000564399 C16orf92Q96LL3 132 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 LINC01587Q99440 93 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 UPK3BQ9BT76 320 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 BLOC1S6Q9UL45 172 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 ANAPC10Q9UM13 185 aa5.06□□□□□ -1.6
VPS4A-203ENST00000564399 MRPS16Q9Y3D3 137 aaKnown RBP5.06□□□□□ -1.6
VPS4A-203ENST00000564399 CEBPZOSA8MTT3 80 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 NXPH3O95157 252 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 P0C879 139 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 PI3P19957 117 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 PRSS3P35030 304 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 UCP3P55916 312 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 SPCS3P61009 180 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 SUPT4H1P63272 117 aaKnown RBP5.05□□□□□ -1.6
VPS4A-203ENST00000564399 HAMPP81172 84 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 C2orf83Q53S99 150 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 C1orf194Q5T5A4 169 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 OR8G2PQ6IF36 304 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 AMTNQ6UX39 209 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 GPR141Q7Z602 305 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 BAP18Q8IXM2 172 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 SPARTQ8N0X7 666 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 SYT8Q8NBV8 401 aa5.05□□□□□ -1.6
VPS4A-203ENST00000564399 SLC24A4Q8NFF2 622 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms