RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 TMEM230Q96A57 120 aa12.13□□□□□ -0.47
HDGFL3-203ENST00000563404 CELA1Q9UNI1 258 aa12.13□□□□□ -0.47
HDGFL3-203ENST00000563404 IGHV4-4A0A075B6R2 117 aa12.12□□□□□ -0.47
HDGFL3-203ENST00000563404 CRYM-AS1A6NIL9 109 aa12.12□□□□□ -0.47
HDGFL3-203ENST00000563404 UCP1P25874 307 aa12.12□□□□□ -0.47
HDGFL3-203ENST00000563404 TRIM16LQ309B1 348 aa12.12□□□□□ -0.47
HDGFL3-203ENST00000563404 CENPSQ8N2Z9 138 aa12.12□□□□□ -0.47
HDGFL3-203ENST00000563404 PDCD10Q9BUL8 212 aa12.12□□□□□ -0.47
HDGFL3-203ENST00000563404 TRAV10A0A0B4J240 114 aa12.11□□□□□ -0.47
HDGFL3-203ENST00000563404 AARDQ4LEZ3 155 aa12.11□□□□□ -0.47
HDGFL3-203ENST00000563404 ENKURQ8TC29 256 aa12.11□□□□□ -0.47
HDGFL3-203ENST00000563404 GLMPQ8WWB7 406 aa12.11□□□□□ -0.47
HDGFL3-203ENST00000563404 RAB40CQ96S21 281 aa12.11□□□□□ -0.47
HDGFL3-203ENST00000563404 NAA60Q9H7X0 242 aa12.11□□□□□ -0.47
HDGFL3-203ENST00000563404 ENY2Q9NPA8 101 aa12.11□□□□□ -0.47
HDGFL3-203ENST00000563404 TEX13DA0A0J9YY54 714 aaPredicted RBP12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 ATG12O94817 140 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 PTTG1O95997 202 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 IGLC1P0CG04 106 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 ANXA3P12429 323 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 DHRS2Q13268 280 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 C12orf74Q32Q52 190 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 PSMG4Q5JS54 123 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 C16orf54Q6UWD8 224 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 ZNF767PQ75MW2 155 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 LHFPL5Q8TAF8 219 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 SCRT1Q9BWW7 348 aa12.1□□□□□ -0.47
HDGFL3-203ENST00000563404 CDS2O95674 445 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 SPCS3P61009 180 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 PRSS54Q6PEW0 395 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 NRARPQ7Z6K4 114 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 GLYATL2Q8WU03 294 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 TMEM170AQ8WVE7 144 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 IL22RA2Q969J5 263 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 RRNAD1Q96FB5 475 aaKnown RBP12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 MARVELD1Q9BSK0 173 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 RNF126Q9BV68 326 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 TMEM222Q9H0R3 208 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 C20orf85Q9H1P6 137 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 TMEM56-RWDD3S4R434 201 aa12.09□□□□□ -0.47
HDGFL3-203ENST00000563404 TRAV30A0A087WSZ9 112 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 A0A1B0GVY2 172 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 HELTA6NFD8 242 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 NXPH3O95157 252 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 HNRNPCP07910 306 aaKnown RBP eCLIP12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 H2AFB2P0C5Z0 115 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 AKR1C4P17516 323 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 RND2P52198 227 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 SUPT4H1P63272 117 aaKnown RBP12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 SRPXP78539 464 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 USF2Q15853 346 aaPredicted RBP12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 TMED4Q7Z7H5 227 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 OR1S2Q8NGQ3 325 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 OR52E5Q8NH55 327 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 NARS2Q96I59 477 aaKnown RBP12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 NUDT15Q9NV35 164 aa12.08□□□□□ -0.48
HDGFL3-203ENST00000563404 IL5P05113 134 aa12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 OR5AC1P0C628 307 aa12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 OR10J1P30954 320 aa12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 HTR2BP41595 481 aa12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 YPEL3P61236 119 aaPredicted RBP12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 C2orf83Q53S99 150 aa12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 LRTM2Q8N967 370 aa12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 RNASE11Q8TAA1 199 aaKnown RBP12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 Q8WTZ3 238 aa12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 GPR146Q96CH1 333 aa12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 FLVCR2Q9UPI3 526 aa12.07□□□□□ -0.48
HDGFL3-203ENST00000563404 DEFB131BA0A096LNP1 70 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 RPS10-NUDT3A0A1W2PQS6 291 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 FAM90A26D6RGX4 464 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 SCGB2A1O75556 95 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 SFT2D2O95562 160 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 AMBPP02760 352 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 OR4E1P0C645 316 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 RGS21Q2M5E4 152 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 SELENOHQ8IZQ5 122 aaKnown RBP12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 HEYLQ9NQ87 328 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 XCL2Q9UBD3 114 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 CACNG5Q9UF02 275 aa12.06□□□□□ -0.48
HDGFL3-203ENST00000563404 A0A0B4J2A0 478 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 DUXBA0A1W2PPF3 345 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 C9orf170A2RU37 121 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 H3BMM0 161 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 PRAF2O60831 178 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 IL4P05112 153 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 EIF2B2P49770 351 aaKnown RBP12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 PPP1R1AQ13522 171 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 LINC00336Q6ZUF6 198 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 FAM219AQ8IW50 185 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 LGI3Q8N145 548 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 RNASEH2CQ8TDP1 164 aaKnown RBP12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 NPIPB3Q92617 1050 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 RBPMSQ93062 196 aaKnown RBP12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 SHPKQ9UHJ6 478 aa12.05□□□□□ -0.48
HDGFL3-203ENST00000563404 ABCA13Q86UQ4 5058 aa12.04□□□□□ -0.48
HDGFL3-203ENST00000563404 TRAV6A0A075B6T7 132 aa12.04□□□□□ -0.48
HDGFL3-203ENST00000563404 INMT-MINDY4F8WBC2 141 aa12.04□□□□□ -0.48
HDGFL3-203ENST00000563404 BUB3O43684 328 aa12.04□□□□□ -0.48
HDGFL3-203ENST00000563404 SLC25A4P12235 298 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms