RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TET2Q6N021 2002 aaPredicted RBP5.95□□□□□ -1.46
VPS39-204ENST00000561818 TMEM88Q6PEY1 159 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 ATRAIDQ6UW56 229 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 MIR17HGQ75NE6 70 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 SSX7Q7RTT5 188 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 CBLN2Q8IUK8 224 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 CMTM2Q8TAZ6 248 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 TMEM37Q8WXS4 190 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 RNF125Q96EQ8 232 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 FMC1Q96HJ9 113 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 ATG101Q9BSB4 218 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 ELOVL1Q9BW60 279 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 AAMDCQ9H7C9 122 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 COLCA2A8K830 154 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 NDUFB4O95168 129 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 REG1AP05451 166 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 NBEAP1P0C6P0 100 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 PSG1P11464 419 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 ORM2P19652 201 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 CSN1S1P47710 185 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 LYZP61626 148 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 UBE2G1P62253 170 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 RPL23P62829 140 aaKnown RBP5.94□□□□□ -1.46
VPS39-204ENST00000561818 SSBP2P81877 361 aaPredicted RBP5.94□□□□□ -1.46
VPS39-204ENST00000561818 FOXL1Q12952 345 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 GCSAMLQ5JQS6 135 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 RASL11AQ6T310 242 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 UNQ5815/PRO19632Q6UWF5 114 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 LINC01551Q86U37 167 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 SFRP2Q96HF1 295 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 RITA1Q96K30 269 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 FAM167A-AS1Q96KT0 104 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 BBC3Q96PG8 261 aaPredicted RBP5.94□□□□□ -1.46
VPS39-204ENST00000561818 SHANK2-AS3Q9BTD1 123 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 SLC25A2Q9BXI2 301 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 OTORQ9NRC9 128 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 MRPL27Q9P0M9 148 aaKnown RBP5.94□□□□□ -1.46
VPS39-204ENST00000561818 RABAC1Q9UI14 185 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 FBXL7Q9UJT9 491 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 RFNGQ9Y644 331 aa5.94□□□□□ -1.46
VPS39-204ENST00000561818 CFAP46Q8IYW2 2715 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 TRAV41A0A0B4J266 112 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 WI2-2373I1.2A0A1W2PRP0 233 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 H3BRN7 92 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 FCN1O00602 326 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 PEX7O00628 323 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 ISLRO14498 428 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 IGKV1-17P01599 117 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 IGHG2P01859 326 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 MT-ND6P03923 174 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 TYMSP04818 313 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 RPL35P42766 123 aaKnown RBP5.93□□□□□ -1.46
VPS39-204ENST00000561818 GALR1P47211 349 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 ATP5G3P48201 142 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 UBE2G2P60604 165 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 ZNF90Q03938 601 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 CT83Q5H943 113 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 LDLRAD2Q5SZI1 272 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 TMEM86BQ8N661 226 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 ISOC2Q96AB3 205 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 FAM210BQ96KR6 192 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 FANCD2OSQ96PS1 177 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 SLC25A39Q9BZJ4 359 aaPredicted RBP5.93□□□□□ -1.46
VPS39-204ENST00000561818 TMPRSS5Q9H3S3 457 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 OSTCQ9NRP0 149 aa5.93□□□□□ -1.46
VPS39-204ENST00000561818 SOX21Q9Y651 276 aaPredicted RBP5.93□□□□□ -1.46
VPS39-204ENST00000561818 ZNF462Q96JM2 2506 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 UBR5O95071 2799 aaPredicted RBP5.92□□□□□ -1.46
VPS39-204ENST00000561818 SCO2A0A1W2PP80 73 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 A0A1W2PS18 150 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 FAM231BA6NCW3 169 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 A6NDX4 124 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 ATP6V0E1O15342 81 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 S100A8P05109 93 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 IL4P05112 153 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 GP9P14770 177 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 HNF1AP20823 631 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 MFAP2P55001 183 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 RPL15P61313 204 aaKnown RBP5.92□□□□□ -1.46
VPS39-204ENST00000561818 SLC35B1P78383 322 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 ATP5G2Q06055 141 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 ELOBQ15370 118 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 TMEM183BQ1AE95 376 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 CYB5R2Q6BCY4 276 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 WDR73Q6P4I2 378 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 FAM231DQ6ZW35 169 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 FAM24BQ8N5W8 94 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 OR10G8Q8NGN5 311 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 C2CD4CQ8TF44 421 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 FXYD5Q96DB9 178 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 MRPL53Q96EL3 112 aaKnown RBP5.92□□□□□ -1.46
VPS39-204ENST00000561818 GRAMD2BQ96HH9 432 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 SLC50A1Q9BRV3 221 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 C20orf24Q9BUV8 137 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 SRD5A3Q9H8P0 318 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 ZFP30Q9Y2G7 519 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 KLF12Q9Y4X4 402 aa5.92□□□□□ -1.46
VPS39-204ENST00000561818 YTHDF2Q9Y5A9 579 aaKnown RBP5.92□□□□□ -1.46
VPS39-204ENST00000561818 FAM208BQ5VWN6 2430 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 XKRY2A2RUG3 117 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 177.2 ms