RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 PKD1L1Q8TDX9 2849 aa16.42■□□□□ 0.22
SNX1-206ENST00000559389 IGHV7-4-1A0A0J9YVY3 117 aa16.41■□□□□ 0.22
SNX1-206ENST00000559389 RPL12P30050 165 aaKnown RBP16.41■□□□□ 0.22
SNX1-206ENST00000559389 USF2Q15853 346 aaPredicted RBP16.41■□□□□ 0.22
SNX1-206ENST00000559389 ATP6V1FQ16864 119 aa16.41■□□□□ 0.22
SNX1-206ENST00000559389 TEPPQ6URK8 271 aa16.41■□□□□ 0.22
SNX1-206ENST00000559389 OR5C1Q8NGR4 320 aa16.41■□□□□ 0.22
SNX1-206ENST00000559389 MLXQ9UH92 298 aa16.41■□□□□ 0.22
SNX1-206ENST00000559389 UBE2L5PA0A1B0GUS4 154 aa16.4■□□□□ 0.22
SNX1-206ENST00000559389 WI2-2373I1.2A0A1W2PRP0 233 aa16.4■□□□□ 0.22
SNX1-206ENST00000559389 OR2F1Q13607 317 aa16.4■□□□□ 0.22
SNX1-206ENST00000559389 BTNL8Q6UX41 500 aa16.4■□□□□ 0.22
SNX1-206ENST00000559389 CYP2G1PQ6ZSU1 146 aa16.4■□□□□ 0.22
SNX1-206ENST00000559389 OR2K2Q8NGT1 345 aa16.4■□□□□ 0.22
SNX1-206ENST00000559389 RNF125Q96EQ8 232 aa16.4■□□□□ 0.22
SNX1-206ENST00000559389 TECRQ9NZ01 308 aaKnown RBP16.4■□□□□ 0.22
SNX1-206ENST00000559389 SMPXQ9UHP9 88 aa16.4■□□□□ 0.22
SNX1-206ENST00000559389 WDR83OSQ9Y284 106 aa16.4■□□□□ 0.22
SNX1-206ENST00000559389 KRTAP10-11P60412 298 aa16.39■□□□□ 0.21
SNX1-206ENST00000559389 DEFB114Q30KQ6 69 aa16.39■□□□□ 0.21
SNX1-206ENST00000559389 METTL26Q96S19 204 aa16.39■□□□□ 0.21
SNX1-206ENST00000559389 IGHV3-49A0A0A0MS15 119 aa16.38■□□□□ 0.21
SNX1-206ENST00000559389 CRYBB3P26998 211 aa16.38■□□□□ 0.21
SNX1-206ENST00000559389 CD300EQ496F6 205 aaPredicted RBP16.38■□□□□ 0.21
SNX1-206ENST00000559389 TMEM182Q6ZP80 229 aaPredicted RBP16.38■□□□□ 0.21
SNX1-206ENST00000559389 AQP10Q96PS8 301 aa16.38■□□□□ 0.21
SNX1-206ENST00000559389 MGST2Q99735 147 aa16.38■□□□□ 0.21
SNX1-206ENST00000559389 CHEK1O14757 476 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 CFDP00746 253 aaPredicted RBP16.37■□□□□ 0.21
SNX1-206ENST00000559389 NPPCP23582 126 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 LYZP61626 148 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 SELENOTP62341 195 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 CLINT1Q14677 625 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 LCN12Q6JVE5 192 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 ZNF546Q86UE3 836 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 BPIFCQ8NFQ6 507 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 RHPN1-AS1Q9BWJ2 59 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 VSIRQ9H7M9 311 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 ZMAT5Q9UDW3 170 aaKnown RBP16.37■□□□□ 0.21
SNX1-206ENST00000559389 NOTCH3Q9UM47 2321 aa16.37■□□□□ 0.21
SNX1-206ENST00000559389 hCG_2014768A0A024R1R8 64 aa16.36■□□□□ 0.21
SNX1-206ENST00000559389 FXYD6-FXYD2A0A087WZ82 144 aa16.36■□□□□ 0.21
SNX1-206ENST00000559389 AGPAT2O15120 278 aa16.36■□□□□ 0.21
SNX1-206ENST00000559389 APOHP02749 345 aaPredicted RBP16.36■□□□□ 0.21
SNX1-206ENST00000559389 HNRNPCP07910 306 aaKnown RBP eCLIP16.36■□□□□ 0.21
SNX1-206ENST00000559389 GATA2P23769 480 aaPredicted RBP16.36■□□□□ 0.21
SNX1-206ENST00000559389 BMI1P35226 326 aa16.36■□□□□ 0.21
SNX1-206ENST00000559389 TMEM61Q8N0U2 210 aa16.36■□□□□ 0.21
SNX1-206ENST00000559389 ATP5SQ99766 215 aa16.36■□□□□ 0.21
SNX1-206ENST00000559389 PBDC1Q9BVG4 233 aa16.36■□□□□ 0.21
SNX1-206ENST00000559389 GGTLC1Q9BX51 225 aa16.36■□□□□ 0.21
SNX1-206ENST00000559389 ZNF256Q9Y2P7 627 aaPredicted RBP16.36■□□□□ 0.21
SNX1-206ENST00000559389 U3KQE9 123 aa16.36■□□□□ 0.21
SNX1-206ENST00000559389 IGHV3OR16-13A0A075B7E8 117 aa16.35■□□□□ 0.21
SNX1-206ENST00000559389 IGHV3-74A0A0B4J1X5 117 aa16.35■□□□□ 0.21
SNX1-206ENST00000559389 IZUMO1RA6ND01 250 aa16.35■□□□□ 0.21
SNX1-206ENST00000559389 SMLR1H3BR10 107 aa16.35■□□□□ 0.21
SNX1-206ENST00000559389 ST8SIA2Q92186 375 aa16.35■□□□□ 0.21
SNX1-206ENST00000559389 RABAC1Q9UI14 185 aa16.35■□□□□ 0.21
SNX1-206ENST00000559389 SLC45A2Q9UMX9 530 aa16.35■□□□□ 0.21
SNX1-206ENST00000559389 TNFSF18Q9UNG2 199 aa16.35■□□□□ 0.21
SNX1-206ENST00000559389 SELENOKQ9Y6D0 94 aa16.35■□□□□ 0.21
SNX1-206ENST00000559389 RNF222A6NCQ9 220 aa16.34■□□□□ 0.21
SNX1-206ENST00000559389 LINC00869P0C866 280 aa16.34■□□□□ 0.21
SNX1-206ENST00000559389 FGF7P21781 194 aa16.34■□□□□ 0.21
SNX1-206ENST00000559389 CAMLGP49069 296 aa16.34■□□□□ 0.21
SNX1-206ENST00000559389 EIF2B2P49770 351 aaKnown RBP16.34■□□□□ 0.21
SNX1-206ENST00000559389 NARS2Q96I59 477 aaKnown RBP16.34■□□□□ 0.21
SNX1-206ENST00000559389 SMIM3Q9BZL3 60 aa16.34■□□□□ 0.21
SNX1-206ENST00000559389 TMEM231Q9H6L2 316 aa16.34■□□□□ 0.21
SNX1-206ENST00000559389 TRAV25A0A0B4J276 109 aa16.33■□□□□ 0.2
SNX1-206ENST00000559389 MPDU1O75352 247 aa16.33■□□□□ 0.2
SNX1-206ENST00000559389 DFFBO76075 338 aa16.33■□□□□ 0.2
SNX1-206ENST00000559389 PLP1P60201 277 aa16.33■□□□□ 0.2
SNX1-206ENST00000559389 RAB31Q13636 194 aa16.33■□□□□ 0.2
SNX1-206ENST00000559389 ST6GAL2Q96JF0 529 aa16.33■□□□□ 0.2
SNX1-206ENST00000559389 RNF2Q99496 336 aa16.33■□□□□ 0.2
SNX1-206ENST00000559389 AURKAIP1Q9NWT8 199 aaPredicted RBP16.33■□□□□ 0.2
SNX1-206ENST00000559389 FBXL17Q9UF56 701 aa16.33■□□□□ 0.2
SNX1-206ENST00000559389 CMYA5Q8N3K9 4069 aa16.33■□□□□ 0.2
SNX1-206ENST00000559389 IGHV3-66A0A0C4DH42 116 aa16.32■□□□□ 0.2
SNX1-206ENST00000559389 A0A1W2PS18 150 aa16.32■□□□□ 0.2
SNX1-206ENST00000559389 GP9P14770 177 aa16.32■□□□□ 0.2
SNX1-206ENST00000559389 NUP62P37198 522 aaPredicted RBP16.32■□□□□ 0.2
SNX1-206ENST00000559389 OPCMLQ14982 345 aa16.32■□□□□ 0.2
SNX1-206ENST00000559389 WDR61Q9GZS3 305 aaKnown RBP16.32■□□□□ 0.2
SNX1-206ENST00000559389 PRR20EP86478 221 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 PRR20CP86479 221 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 PRR20DP86480 221 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 PRR20BP86481 221 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 PRR20AP86496 221 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 FAM90A2PQ658T7 463 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 STPG3Q8N7X2 389 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 INO80EQ8NBZ0 244 aaPredicted RBP16.31■□□□□ 0.2
SNX1-206ENST00000559389 OR1B1Q8NGR6 318 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 GRAMD2BQ96HH9 432 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 PRR25Q96S07 402 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 NPCDR1Q9BY65 106 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 WFDC1Q9HC57 220 aa16.31■□□□□ 0.2
SNX1-206ENST00000559389 A0A1B0GVG6 124 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms