RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CD40P25942 277 aa13.08□□□□□ -0.32
SHMT2-231ENST00000557433 C1orf185Q5T7R7 199 aa13.08□□□□□ -0.32
SHMT2-231ENST00000557433 PET117Q6UWS5 81 aa13.08□□□□□ -0.32
SHMT2-231ENST00000557433 ZADH2Q8N4Q0 377 aa13.08□□□□□ -0.32
SHMT2-231ENST00000557433 TEX45Q8NA69 505 aa13.08□□□□□ -0.32
SHMT2-231ENST00000557433 TMEM116Q8NCL8 245 aa13.08□□□□□ -0.32
SHMT2-231ENST00000557433 ST6GALNAC6Q969X2 333 aa13.08□□□□□ -0.32
SHMT2-231ENST00000557433 IGHV2-70DA0A0C4DH43 119 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 LEPROTL1O95214 131 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 HLA-DRB1P01911 266 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 TCRAP04437 139 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 TMEM200BQ69YZ2 307 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 ASCL5Q7RTU5 278 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 OR1B1Q8NGR6 318 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 C8orf46Q8TAG6 207 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 MS4A6AQ9H2W1 248 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 RAI1Q7Z5J4 1906 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-231ENST00000557433 INTS1Q8N201 2190 aaKnown RBP13.07□□□□□ -0.32
SHMT2-231ENST00000557433 TNCP24821 2201 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 A0A1W2PPI3 338 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 HAX1O00165 279 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 GP9P14770 177 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 UNQ5815/PRO19632Q6UWF5 114 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 TCF24Q7RTU0 167 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 OTORQ9NRC9 128 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 TMEM14CQ9P0S9 112 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 HSPB8Q9UJY1 196 aa13.07□□□□□ -0.32
SHMT2-231ENST00000557433 TRAV30A0A087WSZ9 112 aa13.06□□□□□ -0.32
SHMT2-231ENST00000557433 LOC102724200A0A096LPH7 203 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-231ENST00000557433 IGHV1-24A0A0C4DH33 117 aa13.06□□□□□ -0.32
SHMT2-231ENST00000557433 M0R296 226 aa13.06□□□□□ -0.32
SHMT2-231ENST00000557433 ORM2P19652 201 aa13.06□□□□□ -0.32
SHMT2-231ENST00000557433 FOXA3P55318 350 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-231ENST00000557433 C12orf54Q6X4T0 127 aa13.06□□□□□ -0.32
SHMT2-231ENST00000557433 FAM215AQ9Y5M1 114 aa13.06□□□□□ -0.32
SHMT2-231ENST00000557433 PRR14LQ5THK1 2151 aa13.06□□□□□ -0.32
SHMT2-231ENST00000557433 A0A1B0GW15 77 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 C22orf46C9J442 243 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 CHEK1O14757 476 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 PCP4P48539 62 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 FBLN7Q53RD9 439 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 SLC25A34Q6PIV7 304 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 BLNKQ8WV28 456 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 GTSF1Q8WW33 167 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 MAP1LC3CQ9BXW4 147 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 Q9H3A6 140 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 MRPL36Q9P0J6 103 aaKnown RBP13.05□□□□□ -0.32
SHMT2-231ENST00000557433 PPIAL4EA0A075B759 164 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 C17orf100A8MU93 164 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 PPIAL4DF5H284 164 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 NDUFB3O43676 98 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 PPIAL4FP0DN26 164 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 CCL3L1P16619 93 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 C10orf55Q5SWW7 151 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 C16orf54Q6UWD8 224 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 TMEM108Q6UXF1 575 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 CLEC5AQ9NY25 188 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 RNF24Q9Y225 148 aa13.05□□□□□ -0.32
SHMT2-231ENST00000557433 IGFL3Q6UXB1 125 aa13.04□□□□□ -0.32
SHMT2-231ENST00000557433 GATD1Q8NB37 220 aa13.04□□□□□ -0.32
SHMT2-231ENST00000557433 TNFRSF14Q92956 283 aa13.04□□□□□ -0.32
SHMT2-231ENST00000557433 PGLYRP4Q96LB8 373 aa13.04□□□□□ -0.32
SHMT2-231ENST00000557433 PMCHL2Q9BQD1 86 aa13.04□□□□□ -0.32
SHMT2-231ENST00000557433 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.03□□□□□ -0.32
SHMT2-231ENST00000557433 SLC25A17O43808 307 aa13.03□□□□□ -0.32
SHMT2-231ENST00000557433 PLAUP00749 431 aa13.03□□□□□ -0.32
SHMT2-231ENST00000557433 CEACAM8P31997 349 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-231ENST00000557433 RPL27AP46776 148 aaKnown RBP13.03□□□□□ -0.32
SHMT2-231ENST00000557433 SPATA12Q7Z6I5 190 aa13.03□□□□□ -0.32
SHMT2-231ENST00000557433 Q86TA4 180 aa13.03□□□□□ -0.32
SHMT2-231ENST00000557433 HIGD1AQ9Y241 93 aa13.03□□□□□ -0.32
SHMT2-231ENST00000557433 RHOGP84095 191 aa13.03□□□□□ -0.32
SHMT2-231ENST00000557433 LINC00322Q6ZN03 302 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-231ENST00000557433 KIR3DL3Q8N743 410 aa13.03□□□□□ -0.32
SHMT2-231ENST00000557433 GSX1Q9H4S2 264 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-231ENST00000557433 TMEM178BH3BS89 294 aa13.02□□□□□ -0.32
SHMT2-231ENST00000557433 TNFRSF13BO14836 293 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-231ENST00000557433 HOXB4P17483 251 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-231ENST00000557433 COL8A1P27658 744 aa13.02□□□□□ -0.32
SHMT2-231ENST00000557433 CDKN1BP46527 198 aa13.02□□□□□ -0.32
SHMT2-231ENST00000557433 ASPHD1Q5U4P2 390 aa13.02□□□□□ -0.32
SHMT2-231ENST00000557433 IGF2-ASQ6U949 168 aa13.02□□□□□ -0.32
SHMT2-231ENST00000557433 OR4C5Q8NGB2 326 aa13.02□□□□□ -0.32
SHMT2-231ENST00000557433 ZDBF2Q9HCK1 2354 aa13.02□□□□□ -0.32
SHMT2-231ENST00000557433 DYSFO75923 2080 aa13.02□□□□□ -0.33
SHMT2-231ENST00000557433 PCNX2A6NKB5 2137 aa13.02□□□□□ -0.33
SHMT2-231ENST00000557433 RBX1P62877 108 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 CCL8P80075 99 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 RIGQ13278 110 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 MRGPRG-AS1Q2M3A8 158 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 DEFB109BQ30KR1 87 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 Q6AWC8 147 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 KAAG1Q9UBP8 84 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 RPH3ALQ9UNE2 315 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 APOHP02749 345 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-231ENST00000557433 DLX6P56179 175 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 SRSF6Q13247 344 aaKnown RBP13.01□□□□□ -0.33
SHMT2-231ENST00000557433 PIP4P1Q86T03 277 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 DEFB125Q8N687 156 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 H1FXQ92522 213 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms