RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PSMB11A5LHX3 300 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 AREGP15514 252 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 BRS3P32247 399 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 GPX4P36969 197 aaPredicted RBP11.35□□□□□ -0.59
VPS33A-209ENST00000544349 OR5I1Q13606 314 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 DEFB113Q30KQ7 82 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 OR10G8Q8NGN5 311 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 PFDN5Q99471 154 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 TRAV5A0A0B4J249 113 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 IGHV1-69DA0A0B4J2H0 117 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 MT-CO2P00403 227 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 IGHV1-69P01742 117 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 FAM106CPP0CH98 169 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 APELAP0DMC3 54 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 TMEM11P17152 192 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 CRYBB3P26998 211 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 FOXL1Q12952 345 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 FAM120AOSQ5T036 256 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 RUSC1-AS1Q66K80 236 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 PVRIGQ6DKI7 326 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 C19orf35Q6ZS72 473 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 IMMP2LQ96T52 175 aa11.35□□□□□ -0.59
VPS33A-209ENST00000544349 CRYBG3Q68DQ2 2970 aa11.34□□□□□ -0.59
VPS33A-209ENST00000544349 TRAV40A0A0B4J280 105 aa11.34□□□□□ -0.59
VPS33A-209ENST00000544349 C9JCJ5 164 aa11.34□□□□□ -0.59
VPS33A-209ENST00000544349 CNIH1O95406 144 aa11.34□□□□□ -0.59
VPS33A-209ENST00000544349 CENPWQ5EE01 88 aa11.34□□□□□ -0.59
VPS33A-209ENST00000544349 LRRC75A-AS1Q8N1F1 130 aa11.34□□□□□ -0.59
VPS33A-209ENST00000544349 UHRF2Q96PU4 802 aa11.34□□□□□ -0.59
VPS33A-209ENST00000544349 SRSF8Q9BRL6 282 aaKnown RBP11.34□□□□□ -0.59
VPS33A-209ENST00000544349 SLC25A2Q9BXI2 301 aa11.34□□□□□ -0.59
VPS33A-209ENST00000544349 C7orf69Q9H7B7 122 aa11.34□□□□□ -0.59
VPS33A-209ENST00000544349 TECRQ9NZ01 308 aaKnown RBP11.34□□□□□ -0.59
VPS33A-209ENST00000544349 ASH1LQ9NR48 2969 aaKnown RBP11.34□□□□□ -0.59
VPS33A-209ENST00000544349 IGHV3OR16-10A0A075B7F0 116 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 NCBP2LA6PVI3 153 aaKnown RBP11.33□□□□□ -0.6
VPS33A-209ENST00000544349 FRMD6-AS1P0C7T7 363 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 FAM167A-AS1Q96KT0 104 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 PSMG3-AS1Q96PY0 264 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 HIF1ANQ9NWT6 349 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 TRAPPC1Q9Y5R8 145 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 HELZ2Q9BYK8 2649 aaKnown RBP11.33□□□□□ -0.6
VPS33A-209ENST00000544349 FBN2P35556 2912 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 IGKV1D-37A0A075B6S9 117 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 CNN1P51911 297 aaKnown RBP11.33□□□□□ -0.6
VPS33A-209ENST00000544349 MFAP2P55001 183 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 FXYD3Q14802 87 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 TMEM167BQ9NRX6 74 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 ARL2-SNX15V9GYD0 113 aa11.33□□□□□ -0.6
VPS33A-209ENST00000544349 CBLN1P23435 193 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 ADMP35318 185 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 ZNF90Q03938 601 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 SLC25A33Q9BSK2 321 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 C1RLQ9NZP8 487 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 F11RQ9Y624 299 aaKnown RBP11.32□□□□□ -0.6
VPS33A-209ENST00000544349 GZMBP10144 247 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 GATA3P23771 443 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 ASPHD1Q5U4P2 390 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 ZNF562Q6V9R5 426 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 BRD3OSQ6XYD6 125 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 PQLC2Q6ZP29 291 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 LINC01356Q8N9X3 169 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 PRO1933Q9H354 126 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 IL36BQ9NZH7 164 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 V9GYV3 84 aa11.32□□□□□ -0.6
VPS33A-209ENST00000544349 C8orf88P0DMB2 117 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 IGHV4-38-2P0DP08 117 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 PYYP10082 97 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 GNG4P50150 75 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 CX3CL1P78423 397 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 LOXL1Q08397 574 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-209ENST00000544349 JOSD1Q15040 202 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-209ENST00000544349 DNLZQ5SXM8 178 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 ETFRF1Q6IPR1 90 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 Q8N9W7 124 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 NPIPB3Q92617 1050 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 MISP3Q96FF7 219 aa11.31□□□□□ -0.6
VPS33A-209ENST00000544349 CORTO00230 105 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 NUPR1O60356 82 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 CRYGCP07315 174 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 UBE2L3P68036 154 aaKnown RBP11.3□□□□□ -0.6
VPS33A-209ENST00000544349 PATE2Q6UY27 113 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 TMEM256Q8N2U0 113 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 OR5AU1Q8NGC0 362 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 OR5R1Q8NH85 324 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 IGF2BP2-AS1Q96M15 143 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 FAM103A1Q9BTL3 118 aaKnown RBP11.3□□□□□ -0.6
VPS33A-209ENST00000544349 MEGF9Q9H1U4 602 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 LY96Q9Y6Y9 160 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 VPS13CQ709C8 3753 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 USP9YO00507 2555 aaPredicted RBP11.3□□□□□ -0.6
VPS33A-209ENST00000544349 GRIFINA4D1Z8 144 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 IGLV2-8P01709 118 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 SUMO1P63165 101 aaKnown RBP11.3□□□□□ -0.6
VPS33A-209ENST00000544349 Q5PR19 223 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 HIST2H2BCQ6DN03 193 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 GBGT1Q8N5D6 347 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 MRPL32Q9BYC8 188 aaKnown RBP11.3□□□□□ -0.6
VPS33A-209ENST00000544349 WNT10AQ9GZT5 417 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 RNASE7Q9H1E1 156 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms