RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 FOLR2P14207 255 aa11.52□□□□□ -0.57
USP3-204ENST00000540797 LHFPL4Q7Z7J7 247 aa11.52□□□□□ -0.57
USP3-204ENST00000540797 VOPP1Q96AW1 172 aa11.52□□□□□ -0.57
USP3-204ENST00000540797 SOX21Q9Y651 276 aaPredicted RBP11.52□□□□□ -0.57
USP3-204ENST00000540797 SUPT4H1P63272 117 aaKnown RBP11.52□□□□□ -0.57
USP3-204ENST00000540797 PHF3Q92576 2039 aaKnown RBP11.51□□□□□ -0.57
USP3-204ENST00000540797 TRAV5A0A0B4J249 113 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 A0A1B0GW15 77 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 CD5P06127 495 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 CCL20P78556 96 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 PMCHL1Q16048 86 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 DEFB121Q5J5C9 76 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 HS3ST6Q96QI5 342 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 SLX1AQ9BQ83 275 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 TMEM70Q9BUB7 260 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 BEX4Q9NWD9 120 aaPredicted RBP11.51□□□□□ -0.57
USP3-204ENST00000540797 LINC00205P59089 165 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 ZNF524Q96C55 264 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 IGHV1-69DA0A0B4J2H0 117 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 IGHV1-69P01742 117 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 Q6ZS49 121 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 ZNF503-AS2A6NEH8 195 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 IGLV1-44P01699 117 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 NUP210Q8TEM1 1887 aaPredicted RBP11.51□□□□□ -0.57
USP3-204ENST00000540797 GBF1Q92538 1859 aa11.51□□□□□ -0.57
USP3-204ENST00000540797 TMEM238LA0A1B0GVL6 79 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 A6NJY4 79 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 FAM223BA6NKX1 122 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 CR1LQ2VPA4 569 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 FAM223AQ8IWN6 122 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 BEND2Q8NDZ0 799 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 WFDC1Q9HC57 220 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 NMSQ5H8A3 153 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 GGTLC1Q9BX51 225 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 TRGV11A0A075B6L2 103 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 IGHV2-70DA0A0C4DH43 119 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 TRGV4A0A0C4DH28 118 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 PMS2P5A8MQ11 134 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 ERVK11-1P61568 191 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 TRGV9Q99603 122 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 ZNF256Q9Y2P7 627 aaPredicted RBP11.5□□□□□ -0.57
USP3-204ENST00000540797 PLXNA2O75051 1894 aa11.5□□□□□ -0.57
USP3-204ENST00000540797 H7C2G1 150 aa11.49□□□□□ -0.57
USP3-204ENST00000540797 SLC25A39Q9BZJ4 359 aaPredicted RBP11.49□□□□□ -0.57
USP3-204ENST00000540797 SCRT1Q9BWW7 348 aa11.49□□□□□ -0.57
USP3-204ENST00000540797 HIGD1CA8MV81 97 aa11.49□□□□□ -0.57
USP3-204ENST00000540797 NDPQ00604 133 aa11.49□□□□□ -0.57
USP3-204ENST00000540797 PCNX2A6NKB5 2137 aa11.49□□□□□ -0.57
USP3-204ENST00000540797 C12orf54Q6X4T0 127 aa11.49□□□□□ -0.57
USP3-204ENST00000540797 RNASE7Q9H1E1 156 aaKnown RBP11.49□□□□□ -0.57
USP3-204ENST00000540797 NTF4P34130 210 aa11.49□□□□□ -0.57
USP3-204ENST00000540797 C18orf15Q96N68 181 aa11.49□□□□□ -0.57
USP3-204ENST00000540797 C2orf88Q9BSF0 95 aa11.49□□□□□ -0.57
USP3-204ENST00000540797 IGKV1-16P04430 117 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 ZNF688P0C7X2 276 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 TMEM170BQ5T4T1 132 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 COPS9Q8WXC6 57 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 ALKBH7Q9BT30 221 aaPredicted RBP11.48□□□□□ -0.57
USP3-204ENST00000540797 ZNRD1Q9P1U0 126 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 IZUMO1RA6ND01 250 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 H3BVH4 76 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 APOHP02749 345 aaPredicted RBP11.48□□□□□ -0.57
USP3-204ENST00000540797 SPATA45Q537H7 98 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 IGFL2Q6UWQ7 119 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 PRB1P04280 392 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 RNF166Q96A37 237 aaPredicted RBP11.48□□□□□ -0.57
USP3-204ENST00000540797 SCGB3A1Q96QR1 104 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 VSIRQ9H7M9 311 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 PEF1Q9UBV8 284 aaKnown RBP11.48□□□□□ -0.57
USP3-204ENST00000540797 BDP1A6H8Y1 2624 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 ITGB1BP1O14713 200 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 PRB4P10163 310 aaPredicted RBP11.48□□□□□ -0.57
USP3-204ENST00000540797 LMO1P25800 156 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 OR10J3Q5JRS4 329 aa11.48□□□□□ -0.57
USP3-204ENST00000540797 Q71RC1 249 aaPredicted RBP11.48□□□□□ -0.57
USP3-204ENST00000540797 COX6CP09669 75 aa11.47□□□□□ -0.57
USP3-204ENST00000540797 ZNF25P17030 456 aaPredicted RBP11.47□□□□□ -0.57
USP3-204ENST00000540797 PKIAP61925 76 aa11.47□□□□□ -0.57
USP3-204ENST00000540797 ORMDL3Q8N138 153 aa11.47□□□□□ -0.57
USP3-204ENST00000540797 CFHR2P36980 270 aa11.47□□□□□ -0.57
USP3-204ENST00000540797 PPIFP30405 207 aaKnown RBP11.47□□□□□ -0.57
USP3-204ENST00000540797 RPL23P62829 140 aaKnown RBP11.47□□□□□ -0.57
USP3-204ENST00000540797 HIST1H4GQ99525 98 aa11.47□□□□□ -0.57
USP3-204ENST00000540797 TMEM50AO95807 157 aa11.47□□□□□ -0.57
USP3-204ENST00000540797 DOPEY2Q9Y3R5 2298 aa11.47□□□□□ -0.57
USP3-204ENST00000540797 IMMP2LQ96T52 175 aa11.46□□□□□ -0.57
USP3-204ENST00000540797 TMEM160Q9NX00 188 aa11.46□□□□□ -0.57
USP3-204ENST00000540797 IGLV3-9A0A075B6K5 115 aa11.46□□□□□ -0.57
USP3-204ENST00000540797 IGKV2-40A0A087WW87 121 aaPredicted RBP11.46□□□□□ -0.57
USP3-204ENST00000540797 ZNF98A6NK75 572 aa11.46□□□□□ -0.57
USP3-204ENST00000540797 J3QLI3 93 aa11.46□□□□□ -0.57
USP3-204ENST00000540797 IGKV2D-40P01614 121 aaPredicted RBP11.46□□□□□ -0.57
USP3-204ENST00000540797 LOXP28300 417 aaPredicted RBP11.46□□□□□ -0.57
USP3-204ENST00000540797 DNLZQ5SXM8 178 aa11.46□□□□□ -0.57
USP3-204ENST00000540797 TMEM14EPQ6UXP3 125 aa11.46□□□□□ -0.57
USP3-204ENST00000540797 ZNF414Q96IQ9 312 aa11.46□□□□□ -0.57
USP3-204ENST00000540797 MGST2Q99735 147 aa11.46□□□□□ -0.57
USP3-204ENST00000540797 CARHSP1Q9Y2V2 147 aaKnown RBP11.46□□□□□ -0.57
USP3-204ENST00000540797 PCNX1Q96RV3 2341 aa11.46□□□□□ -0.58
USP3-204ENST00000540797 RPL35AP18077 110 aaKnown RBP11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms