RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 GSG1LQ6UXU4 331 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 SIGLEC15Q6ZMC9 328 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 LYZL2Q7Z4W2 148 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 NOXA1Q86UR1 476 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 CLVS1Q8IUQ0 354 aaPredicted RBP6.08□□□□□ -1.44
USP28-203ENST00000537490 IL22RA2Q969J5 263 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 DIRAS2Q96HU8 199 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 RNF126Q9BV68 326 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 RBKSQ9H477 322 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 SEPSECSQ9HD40 501 aaKnown RBP6.08□□□□□ -1.44
USP28-203ENST00000537490 NRN1Q9NPD7 142 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 KCNIP3Q9Y2W7 256 aa6.08□□□□□ -1.44
USP28-203ENST00000537490 IGKV1D-37A0A075B6S9 117 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 DEFB131BA0A096LNP1 70 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 ANKRD20A5PA0PJZ0 165 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 GSTZ1O43708 216 aaPredicted RBP6.07□□□□□ -1.44
USP28-203ENST00000537490 IGKV3-20P01619 116 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 HLA-DRB4P13762 266 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 CCR6P51684 374 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 FXYD7P58549 80 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 NUTF2P61970 127 aaKnown RBP6.07□□□□□ -1.44
USP28-203ENST00000537490 SNRPD3P62318 126 aaKnown RBP6.07□□□□□ -1.44
USP28-203ENST00000537490 SUPT4H1P63272 117 aaKnown RBP6.07□□□□□ -1.44
USP28-203ENST00000537490 KLF9Q13886 244 aaPredicted RBP6.07□□□□□ -1.44
USP28-203ENST00000537490 GDF5OSQ5U4N7 250 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 GPR141Q7Z602 305 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 LGI3Q8N145 548 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 CENPSQ8N2Z9 138 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 DTD1Q8TEA8 209 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 RNF125Q96EQ8 232 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 PRRT1Q99946 306 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 HSPB7Q9UBY9 170 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 U3KQ87 197 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 HLA-DRB4X5D2U9 266 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 FRAS1Q86XX4 4008 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 VPS13DQ5THJ4 4388 aa6.07□□□□□ -1.44
USP28-203ENST00000537490 A0A0B4J2A0 478 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 AKR1C4P17516 323 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 NKX2-1P43699 371 aaPredicted RBP6.06□□□□□ -1.44
USP28-203ENST00000537490 ZNF90Q03938 601 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 GAMTQ14353 236 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 SMCO1Q147U7 214 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 ZNF705AQ6ZN79 300 aaPredicted RBP6.06□□□□□ -1.44
USP28-203ENST00000537490 DYNC2LI1Q8TCX1 351 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 SOSTQ9BQB4 213 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 PBDC1Q9BVG4 233 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 C1QTNF4Q9BXJ3 329 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 MRPS26Q9BYN8 205 aaKnown RBP6.06□□□□□ -1.44
USP28-203ENST00000537490 WDR12Q9GZL7 423 aaKnown RBP6.06□□□□□ -1.44
USP28-203ENST00000537490 CACFD1Q9UGQ2 172 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 SHPKQ9UHJ6 478 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 SCP2D1Q9UJQ7 156 aa6.06□□□□□ -1.44
USP28-203ENST00000537490 ZFP92A6NM28 416 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 ZNF705FA8MVS1 300 aaPredicted RBP6.05□□□□□ -1.44
USP28-203ENST00000537490 SOCS3O14543 225 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 AMBPP02760 352 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 ZNF705DP0CH99 300 aaPredicted RBP6.05□□□□□ -1.44
USP28-203ENST00000537490 ZNF705BP0CI00 300 aaPredicted RBP6.05□□□□□ -1.44
USP28-203ENST00000537490 GPX4P36969 197 aaPredicted RBP6.05□□□□□ -1.44
USP28-203ENST00000537490 EMP1P54849 157 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 LYZP61626 148 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 OR2F1Q13607 317 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 OR8G2PQ6IF36 304 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 POM121L12Q8N7R1 296 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 LINC00052Q96N35 136 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 SCGB3A2Q96PL1 93 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 NEU1Q99519 415 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 SAV1Q9H4B6 383 aaPredicted RBP6.05□□□□□ -1.44
USP28-203ENST00000537490 MCUBQ9NWR8 336 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 CCDC59Q9P031 241 aaKnown RBP6.05□□□□□ -1.44
USP28-203ENST00000537490 RABL2AQ9UBK7 228 aaPredicted RBP6.05□□□□□ -1.44
USP28-203ENST00000537490 RABL2BQ9UNT1 228 aa6.05□□□□□ -1.44
USP28-203ENST00000537490 HERC2O95714 4834 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 IGHV3OR16-12A0A075B7B8 117 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 A0A1B0GVY2 172 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 SNRPGP15A8MWD9 76 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 F6UB75 175 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 M0R2N4 97 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 PITX3O75364 302 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 SPART-AS1P0CW21 52 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 IAPPP10997 89 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 TNFSF8P32971 234 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 ID1P41134 155 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 ATP5IP56385 69 aaPredicted RBP6.04□□□□□ -1.44
USP28-203ENST00000537490 LCE2AQ5TA79 106 aaPredicted RBP6.04□□□□□ -1.44
USP28-203ENST00000537490 FOXI2Q6ZQN5 318 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 LINC00336Q6ZUF6 198 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 ZNF709Q8N972 641 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 OR4B1Q8NGF8 309 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 OR1S1Q8NH92 325 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 SLC35E1Q96K37 410 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 NDUFAF3Q9BU61 184 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 SLIRPQ9GZT3 109 aaKnown RBP6.04□□□□□ -1.44
USP28-203ENST00000537490 SLC35B3Q9H1N7 401 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 RSL24D1Q9UHA3 163 aaKnown RBP6.04□□□□□ -1.44
USP28-203ENST00000537490 PFDN2Q9UHV9 154 aa6.04□□□□□ -1.44
USP28-203ENST00000537490 IGKV1OR2-108A0A075B7D4 117 aa6.03□□□□□ -1.44
USP28-203ENST00000537490 FABP12A6NFH5 140 aa6.03□□□□□ -1.44
USP28-203ENST00000537490 SMIM9A6NGZ8 99 aa6.03□□□□□ -1.44
USP28-203ENST00000537490 P0DMU3 169 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms