RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 HSPB7Q9UBY9 170 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 SHPKQ9UHJ6 478 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 TRAV10A0A0B4J240 114 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 FABP1P07148 127 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 RBMY1A1P0DJD3 496 aaKnown RBP10.1□□□□□ -0.79
SYNE1-235ENST00000537033 RBMY1CP0DJD4 496 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 PSG1P11464 419 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 FAUP35544 74 aaKnown RBP10.1□□□□□ -0.79
SYNE1-235ENST00000537033 TMBIM6P55061 237 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 ATP5IP56385 69 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-235ENST00000537033 KLF9Q13886 244 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-235ENST00000537033 RBMY1FQ15415 496 aaKnown RBP10.1□□□□□ -0.79
SYNE1-235ENST00000537033 OR51G1Q8NGK1 321 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 OR1S1Q8NH92 325 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 DYNC2LI1Q8TCX1 351 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 RNF125Q96EQ8 232 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 SLC35E1Q96K37 410 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 PBDC1Q9BVG4 233 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 RBKSQ9H477 322 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 PRR13Q9NZ81 148 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 X6R8D5 127 aa10.1□□□□□ -0.79
SYNE1-235ENST00000537033 ZFP92A6NM28 416 aa10.09□□□□□ -0.79
SYNE1-235ENST00000537033 BUB3O43684 328 aa10.09□□□□□ -0.79
SYNE1-235ENST00000537033 OR8G2PQ6IF36 304 aa10.09□□□□□ -0.79
SYNE1-235ENST00000537033 FABP12A6NFH5 140 aa10.08□□□□□ -0.8
SYNE1-235ENST00000537033 Q6ZTC4 211 aa10.08□□□□□ -0.8
SYNE1-235ENST00000537033 LYZL2Q7Z4W2 148 aa10.08□□□□□ -0.8
SYNE1-235ENST00000537033 CSNK1G2-AS1Q8NCQ2 148 aa10.08□□□□□ -0.8
SYNE1-235ENST00000537033 APLNQ9ULZ1 77 aa10.08□□□□□ -0.8
SYNE1-235ENST00000537033 ELOA3CA0A087WX78 387 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-235ENST00000537033 HLA-DRB4P13762 266 aa10.07□□□□□ -0.8
SYNE1-235ENST00000537033 GPX4P36969 197 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-235ENST00000537033 ID1P41134 155 aa10.07□□□□□ -0.8
SYNE1-235ENST00000537033 AP3S2P59780 193 aa10.07□□□□□ -0.8
SYNE1-235ENST00000537033 RAB11AP62491 216 aa10.07□□□□□ -0.8
SYNE1-235ENST00000537033 SUPT4H1P63272 117 aaKnown RBP10.07□□□□□ -0.8
SYNE1-235ENST00000537033 TMED4Q7Z7H5 227 aa10.07□□□□□ -0.8
SYNE1-235ENST00000537033 COQ8AQ8NI60 647 aa10.07□□□□□ -0.8
SYNE1-235ENST00000537033 PPP1R14BQ96C90 147 aa10.07□□□□□ -0.8
SYNE1-235ENST00000537033 XCL2Q9UBD3 114 aa10.07□□□□□ -0.8
SYNE1-235ENST00000537033 HLA-DRB4X5D2U9 266 aa10.07□□□□□ -0.8
SYNE1-235ENST00000537033 IGHV4-4A0A075B6R2 117 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 DUXBA0A1W2PPF3 345 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 H3BMM0 161 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 TNFSF8P32971 234 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 NKX2-1P43699 371 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-235ENST00000537033 LYZP61626 148 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 PRR20EP86478 221 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 PRR20CP86479 221 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 PRR20DP86480 221 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 PRR20BP86481 221 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 PRR20AP86496 221 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 GAMTQ14353 236 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 MCFD2Q8NI22 146 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 RNF126Q9BV68 326 aa10.06□□□□□ -0.8
SYNE1-235ENST00000537033 SLIRPQ9GZT3 109 aaKnown RBP10.06□□□□□ -0.8
SYNE1-235ENST00000537033 PAIP2BQ9ULR5 123 aaKnown RBP10.06□□□□□ -0.8
SYNE1-235ENST00000537033 SNRPGP15A8MWD9 76 aa10.05□□□□□ -0.8
SYNE1-235ENST00000537033 VAMP1P23763 118 aa10.05□□□□□ -0.8
SYNE1-235ENST00000537033 PSMB3P49720 205 aa10.05□□□□□ -0.8
SYNE1-235ENST00000537033 ZNF90Q03938 601 aa10.05□□□□□ -0.8
SYNE1-235ENST00000537033 TMEM128Q5BJH2 165 aa10.05□□□□□ -0.8
SYNE1-235ENST00000537033 LINC00052Q96N35 136 aa10.05□□□□□ -0.8
SYNE1-235ENST00000537033 DEFB131BA0A096LNP1 70 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 H3BMQ9 156 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 MED6O75586 246 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 AMBPP02760 352 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 RPP30P78346 268 aaKnown RBP10.04□□□□□ -0.8
SYNE1-235ENST00000537033 PYDC2Q56P42 97 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 C1orf194Q5T5A4 169 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 SAMD13Q5VXD3 122 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 FOXI2Q6ZQN5 318 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 TOMM5Q8N4H5 51 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 CIB3Q96Q77 187 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-235ENST00000537033 CELA1Q9UNI1 258 aa10.04□□□□□ -0.8
SYNE1-235ENST00000537033 TMEM189A5PLL7 270 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 IGKV3-20P01619 116 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 IAPPP10997 89 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 OR2F1Q13607 317 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 C12orf74Q32Q52 190 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 SPATA31B1PQ5VZV4 182 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 ZNF767PQ75MW2 155 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 OR8I2Q8N0Y5 310 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 TRGV9Q99603 122 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 SOSTQ9BQB4 213 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 WDR12Q9GZL7 423 aaKnown RBP10.03□□□□□ -0.8
SYNE1-235ENST00000537033 SAV1Q9H4B6 383 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-235ENST00000537033 KMT2AQ03164 3969 aa10.03□□□□□ -0.8
SYNE1-235ENST00000537033 FRAS1Q86XX4 4008 aa10.02□□□□□ -0.8
SYNE1-235ENST00000537033 IGKV1D-37A0A075B6S9 117 aa10.02□□□□□ -0.81
SYNE1-235ENST00000537033 IGHV3OR16-12A0A075B7B8 117 aa10.02□□□□□ -0.81
SYNE1-235ENST00000537033 SMIM9A6NGZ8 99 aa10.02□□□□□ -0.81
SYNE1-235ENST00000537033 PITX3O75364 302 aa10.02□□□□□ -0.81
SYNE1-235ENST00000537033 CFDP00746 253 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-235ENST00000537033 SLC25A6P12236 298 aa10.02□□□□□ -0.81
SYNE1-235ENST00000537033 S100A7P31151 101 aa10.02□□□□□ -0.81
SYNE1-235ENST00000537033 GDF5OSQ5U4N7 250 aa10.02□□□□□ -0.81
SYNE1-235ENST00000537033 GGNBP1Q5YKI7 109 aa10.02□□□□□ -0.81
SYNE1-235ENST00000537033 EBLN2Q6P2I7 272 aa10.02□□□□□ -0.81
SYNE1-235ENST00000537033 ZNF705AQ6ZN79 300 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms