RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RNF125Q96EQ8 232 aa15.22■□□□□ 0.03
VPS28-206ENST00000526734 CCDC32Q9BV29 185 aa15.22■□□□□ 0.03
VPS28-206ENST00000526734 CSTL1Q9H114 145 aa15.22■□□□□ 0.03
VPS28-206ENST00000526734 FLVCR2Q9UPI3 526 aa15.22■□□□□ 0.03
VPS28-206ENST00000526734 MPTX1A8MV57 137 aa15.21■□□□□ 0.03
VPS28-206ENST00000526734 DEFB131AP59861 70 aa15.21■□□□□ 0.03
VPS28-206ENST00000526734 ID3Q02535 119 aa15.21■□□□□ 0.03
VPS28-206ENST00000526734 GATAD1Q8WUU5 269 aa15.21■□□□□ 0.03
VPS28-206ENST00000526734 TRGV9Q99603 122 aa15.21■□□□□ 0.03
VPS28-206ENST00000526734 SEPSECSQ9HD40 501 aaKnown RBP15.21■□□□□ 0.03
VPS28-206ENST00000526734 PAIP2BQ9ULR5 123 aaKnown RBP15.21■□□□□ 0.03
VPS28-206ENST00000526734 WRBO00258 174 aa15.2■□□□□ 0.02
VPS28-206ENST00000526734 LYRM1O43325 122 aa15.2■□□□□ 0.02
VPS28-206ENST00000526734 ADAP1O75689 374 aa15.2■□□□□ 0.02
VPS28-206ENST00000526734 CFDP00746 253 aaPredicted RBP15.2■□□□□ 0.02
VPS28-206ENST00000526734 ATF4P18848 351 aaPredicted RBP15.2■□□□□ 0.02
VPS28-206ENST00000526734 DCANP1Q8TF63 244 aa15.2■□□□□ 0.02
VPS28-206ENST00000526734 MAGT1Q9H0U3 335 aa15.2■□□□□ 0.02
VPS28-206ENST00000526734 STRAPQ9Y3F4 350 aaKnown RBP15.2■□□□□ 0.02
VPS28-206ENST00000526734 BUB3O43684 328 aa15.19■□□□□ 0.02
VPS28-206ENST00000526734 ANXA7P20073 488 aaKnown RBP15.19■□□□□ 0.02
VPS28-206ENST00000526734 NKX2-1P43699 371 aaPredicted RBP15.19■□□□□ 0.02
VPS28-206ENST00000526734 TMEM217Q8N7C4 229 aa15.19■□□□□ 0.02
VPS28-206ENST00000526734 THAP8Q8NA92 274 aa15.19■□□□□ 0.02
VPS28-206ENST00000526734 MITD1Q8WV92 249 aa15.19■□□□□ 0.02
VPS28-206ENST00000526734 C20orf85Q9H1P6 137 aa15.19■□□□□ 0.02
VPS28-206ENST00000526734 IGKV1D-37A0A075B6S9 117 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 SNRPGP15A8MWD9 76 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 PLA2G10O15496 165 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 ZNF124Q15973 351 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 TMEM41BQ5BJD5 291 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 SPANXN5Q5MJ07 72 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 STHQ8IWL8 128 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 OR4D5Q8NGN0 318 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 S100ZQ8WXG8 99 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 NRN1Q9NPD7 142 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 FBXL17Q9UF56 701 aa15.18■□□□□ 0.02
VPS28-206ENST00000526734 PRSS46E5RG02 174 aa15.17■□□□□ 0.02
VPS28-206ENST00000526734 C1orf194Q5T5A4 169 aa15.17■□□□□ 0.02
VPS28-206ENST00000526734 SIGLEC15Q6ZMC9 328 aa15.17■□□□□ 0.02
VPS28-206ENST00000526734 FAM24BQ8N5W8 94 aa15.17■□□□□ 0.02
VPS28-206ENST00000526734 PBDC1Q9BVG4 233 aa15.17■□□□□ 0.02
VPS28-206ENST00000526734 ZNF688P0C7X2 276 aa15.16■□□□□ 0.02
VPS28-206ENST00000526734 S100A7P31151 101 aa15.16■□□□□ 0.02
VPS28-206ENST00000526734 SNRPD3P62318 126 aaKnown RBP15.16■□□□□ 0.02
VPS28-206ENST00000526734 ZNF90Q03938 601 aa15.16■□□□□ 0.02
VPS28-206ENST00000526734 LEMD1Q68G75 181 aa15.16■□□□□ 0.02
VPS28-206ENST00000526734 MORN3Q6PF18 240 aaPredicted RBP15.16■□□□□ 0.02
VPS28-206ENST00000526734 SLC45A2Q9UMX9 530 aa15.16■□□□□ 0.02
VPS28-206ENST00000526734 TCRBP04435 133 aa15.15■□□□□ 0.02
VPS28-206ENST00000526734 SPP1P10451 314 aa15.15■□□□□ 0.02
VPS28-206ENST00000526734 POLR2GP62487 172 aaKnown RBP eCLIP15.15■□□□□ 0.02
VPS28-206ENST00000526734 IAH1Q2TAA2 248 aaPredicted RBP15.15■□□□□ 0.02
VPS28-206ENST00000526734 SMIM8Q96KF7 97 aa15.15■□□□□ 0.02
VPS28-206ENST00000526734 RAB40CQ96S21 281 aa15.15■□□□□ 0.02
VPS28-206ENST00000526734 PSENENQ9NZ42 101 aa15.15■□□□□ 0.02
VPS28-206ENST00000526734 A0A0J9YWU9 116 aa15.14■□□□□ 0.01
VPS28-206ENST00000526734 LCE6AA0A183 80 aa15.14■□□□□ 0.01
VPS28-206ENST00000526734 H3BP45 60 aa15.14■□□□□ 0.01
VPS28-206ENST00000526734 CA1P00915 261 aaPredicted RBP15.14■□□□□ 0.01
VPS28-206ENST00000526734 TAS2R30P59541 319 aa15.14■□□□□ 0.01
VPS28-206ENST00000526734 LYZP61626 148 aa15.14■□□□□ 0.01
VPS28-206ENST00000526734 AKR1C1Q04828 323 aa15.14■□□□□ 0.01
VPS28-206ENST00000526734 TRPT1Q86TN4 253 aaKnown RBP15.14■□□□□ 0.01
VPS28-206ENST00000526734 IGKV1OR2-108A0A075B7D4 117 aa15.13■□□□□ 0.01
VPS28-206ENST00000526734 SSSCA1O60232 199 aa15.13■□□□□ 0.01
VPS28-206ENST00000526734 SAMD13Q5VXD3 122 aa15.13■□□□□ 0.01
VPS28-206ENST00000526734 ACOT7LQ6ZUV0 252 aa15.13■□□□□ 0.01
VPS28-206ENST00000526734 TMEM144Q7Z5S9 345 aa15.13■□□□□ 0.01
VPS28-206ENST00000526734 ZBTB8BQ8NAP8 495 aaPredicted RBP15.13■□□□□ 0.01
VPS28-206ENST00000526734 BPIFCQ8NFQ6 507 aa15.13■□□□□ 0.01
VPS28-206ENST00000526734 FNDC10F2Z333 226 aa15.12■□□□□ 0.01
VPS28-206ENST00000526734 TSC22D2O75157 780 aa15.12■□□□□ 0.01
VPS28-206ENST00000526734 OR2F1Q13607 317 aa15.12■□□□□ 0.01
VPS28-206ENST00000526734 ZNF846Q147U1 533 aa15.12■□□□□ 0.01
VPS28-206ENST00000526734 PSMG4Q5JS54 123 aa15.12■□□□□ 0.01
VPS28-206ENST00000526734 MZT2BQ6NZ67 158 aa15.12■□□□□ 0.01
VPS28-206ENST00000526734 PPP1R14BQ96C90 147 aa15.12■□□□□ 0.01
VPS28-206ENST00000526734 RARRES2Q99969 163 aa15.12■□□□□ 0.01
VPS28-206ENST00000526734 NUDT15Q9NV35 164 aa15.12■□□□□ 0.01
VPS28-206ENST00000526734 JTBO76095 146 aa15.11■□□□□ 0.01
VPS28-206ENST00000526734 DLK1P80370 383 aa15.11■□□□□ 0.01
VPS28-206ENST00000526734 ZNF431Q8TF32 576 aaPredicted RBP15.11■□□□□ 0.01
VPS28-206ENST00000526734 RYR3Q15413 4870 aa15.1■□□□□ 0.01
VPS28-206ENST00000526734 SCGB1D2O95969 90 aa15.1■□□□□ 0.01
VPS28-206ENST00000526734 ID1P41134 155 aa15.1■□□□□ 0.01
VPS28-206ENST00000526734 TMEM14EPQ6UXP3 125 aa15.1■□□□□ 0.01
VPS28-206ENST00000526734 WDR12Q9GZL7 423 aaKnown RBP15.1■□□□□ 0.01
VPS28-206ENST00000526734 C11orf68Q9H3H3 251 aaKnown RBP15.1■□□□□ 0.01
VPS28-206ENST00000526734 GSKIPQ9P0R6 139 aa15.1■□□□□ 0.01
VPS28-206ENST00000526734 TRAV6A0A075B6T7 132 aa15.09■□□□□ 0.01
VPS28-206ENST00000526734 FAM240BA0A1B0GVZ2 78 aa15.09■□□□□ 0.01
VPS28-206ENST00000526734 NUPR2A6NF83 97 aa15.09■□□□□ 0.01
VPS28-206ENST00000526734 A6NHS1 94 aa15.09■□□□□ 0.01
VPS28-206ENST00000526734 MEOX2P50222 304 aa15.09■□□□□ 0.01
VPS28-206ENST00000526734 NUTF2P61970 127 aaKnown RBP15.09■□□□□ 0.01
VPS28-206ENST00000526734 SELENOTP62341 195 aa15.09■□□□□ 0.01
VPS28-206ENST00000526734 ASAH1Q13510 395 aa15.09■□□□□ 0.01
VPS28-206ENST00000526734 ACTL10Q5JWF8 245 aa15.09■□□□□ 0.01
VPS28-206ENST00000526734 OR8I2Q8N0Y5 310 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms