RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	TMEM147	Q9BVK8	224 aa		15.72	■□□□□ 0.11
CD44-222	ENST00000526025	UQCC1	Q9NVA1	299 aa		15.72	■□□□□ 0.11
CD44-222	ENST00000526025	IGHV7-4-1	A0A0J9YVY3	117 aa		15.71	■□□□□ 0.11
CD44-222	ENST00000526025	SELENOT	P62341	195 aa		15.71	■□□□□ 0.11
CD44-222	ENST00000526025	ZNF90	Q03938	601 aa		15.71	■□□□□ 0.11
CD44-222	ENST00000526025	DEFB114	Q30KQ6	69 aa		15.71	■□□□□ 0.11
CD44-222	ENST00000526025	LILRB2	Q8N423	598 aa		15.71	■□□□□ 0.11
CD44-222	ENST00000526025	METTL26	Q96S19	204 aa		15.71	■□□□□ 0.11
CD44-222	ENST00000526025	SMPX	Q9UHP9	88 aa		15.71	■□□□□ 0.11
CD44-222	ENST00000526025	IGHV3OR16-8	A0A075B7F1	116 aa		15.7	■□□□□ 0.1
CD44-222	ENST00000526025	WI2-2373I1.2	A0A1W2PRP0	233 aa		15.7	■□□□□ 0.1
CD44-222	ENST00000526025	IL4	P05112	153 aa		15.7	■□□□□ 0.1
CD44-222	ENST00000526025	CRYBB3	P26998	211 aa		15.7	■□□□□ 0.1
CD44-222	ENST00000526025	RPL12	P30050	165 aa	Known RBP	15.7	■□□□□ 0.1
CD44-222	ENST00000526025	LCN12	Q6JVE5	192 aa		15.7	■□□□□ 0.1
CD44-222	ENST00000526025	OR2T35	Q8NGX2	323 aa		15.7	■□□□□ 0.1
CD44-222	ENST00000526025	RNF125	Q96EQ8	232 aa		15.7	■□□□□ 0.1
CD44-222	ENST00000526025	TRAV25	A0A0B4J276	109 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	CD5	P06127	495 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	EDN2	P20800	178 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	NPPC	P23582	126 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	NHLH2	Q02577	135 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	CYP2G1P	Q6ZSU1	146 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	BPIFC	Q8NFQ6	507 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	OR5C1	Q8NGR4	320 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	TMEM231	Q9H6L2	316 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	VSIR	Q9H7M9	311 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	MLX	Q9UH92	298 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	WDR83OS	Q9Y284	106 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025	HSPB11	Q9Y547	144 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025		U3KQE9	123 aa		15.69	■□□□□ 0.1
CD44-222	ENST00000526025		A0A1W2PS18	150 aa		15.68	■□□□□ 0.1
CD44-222	ENST00000526025	CHEK1	O14757	476 aa		15.68	■□□□□ 0.1
CD44-222	ENST00000526025	ZNF207	O43670	478 aa	Known RBP	15.68	■□□□□ 0.1
CD44-222	ENST00000526025	MPDU1	O75352	247 aa		15.68	■□□□□ 0.1
CD44-222	ENST00000526025	NUP62	P37198	522 aa	Predicted RBP	15.68	■□□□□ 0.1
CD44-222	ENST00000526025	KRTAP10-11	P60412	298 aa		15.68	■□□□□ 0.1
CD44-222	ENST00000526025	RAB31	Q13636	194 aa		15.68	■□□□□ 0.1
CD44-222	ENST00000526025	ZNF546	Q86UE3	836 aa		15.68	■□□□□ 0.1
CD44-222	ENST00000526025	CHAC2	Q8WUX2	184 aa		15.68	■□□□□ 0.1
CD44-222	ENST00000526025	NARS2	Q96I59	477 aa	Known RBP	15.68	■□□□□ 0.1
CD44-222	ENST00000526025	SLC45A2	Q9UMX9	530 aa		15.68	■□□□□ 0.1
CD44-222	ENST00000526025	ZNF256	Q9Y2P7	627 aa	Predicted RBP	15.68	■□□□□ 0.1
CD44-222	ENST00000526025	HNRNPC	P07910	306 aa	Known RBP eCLIP	15.67	■□□□□ 0.1
CD44-222	ENST00000526025	USF2	Q15853	346 aa	Predicted RBP	15.67	■□□□□ 0.1
CD44-222	ENST00000526025	CD300E	Q496F6	205 aa	Predicted RBP	15.67	■□□□□ 0.1
CD44-222	ENST00000526025	BTNL8	Q6UX41	500 aa		15.67	■□□□□ 0.1
CD44-222	ENST00000526025	AQP10	Q96PS8	301 aa		15.67	■□□□□ 0.1
CD44-222	ENST00000526025	RHPN1-AS1	Q9BWJ2	59 aa		15.67	■□□□□ 0.1
CD44-222	ENST00000526025	PFDN2	Q9UHV9	154 aa		15.67	■□□□□ 0.1
CD44-222	ENST00000526025	RABAC1	Q9UI14	185 aa		15.67	■□□□□ 0.1
CD44-222	ENST00000526025		G3V3Q6	166 aa		15.66	■□□□□ 0.1
CD44-222	ENST00000526025	DFFB	O76075	338 aa		15.66	■□□□□ 0.1
CD44-222	ENST00000526025	PLP1	P60201	277 aa		15.66	■□□□□ 0.1
CD44-222	ENST00000526025		Q5BKY6	102 aa		15.66	■□□□□ 0.1
CD44-222	ENST00000526025	UBE2L5P	A0A1B0GUS4	154 aa		15.65	■□□□□ 0.1
CD44-222	ENST00000526025	AGPAT2	O15120	278 aa		15.65	■□□□□ 0.1
CD44-222	ENST00000526025	S100A7	P31151	101 aa		15.65	■□□□□ 0.1
CD44-222	ENST00000526025	EIF2B2	P49770	351 aa	Known RBP	15.65	■□□□□ 0.1
CD44-222	ENST00000526025	OR2F1	Q13607	317 aa		15.65	■□□□□ 0.1
CD44-222	ENST00000526025	PXDC1	Q5TGL8	231 aa		15.65	■□□□□ 0.1
CD44-222	ENST00000526025	LAMTOR1	Q6IAA8	161 aa		15.65	■□□□□ 0.1
CD44-222	ENST00000526025	GRAMD2B	Q96HH9	432 aa		15.65	■□□□□ 0.1
CD44-222	ENST00000526025	MGST2	Q99735	147 aa		15.65	■□□□□ 0.1
CD44-222	ENST00000526025	ATP5S	Q99766	215 aa		15.65	■□□□□ 0.1
CD44-222	ENST00000526025	TSPAN4	O14817	238 aa		15.64	■□□□□ 0.09
CD44-222	ENST00000526025	CAMLG	P49069	296 aa		15.64	■□□□□ 0.09
CD44-222	ENST00000526025	LYZ	P61626	148 aa		15.64	■□□□□ 0.09
CD44-222	ENST00000526025	TMEM61	Q8N0U2	210 aa		15.64	■□□□□ 0.09
CD44-222	ENST00000526025	ST8SIA2	Q92186	375 aa		15.64	■□□□□ 0.09
CD44-222	ENST00000526025	GP9	P14770	177 aa		15.63	■□□□□ 0.09
CD44-222	ENST00000526025	FAM90A2P	Q658T7	463 aa		15.63	■□□□□ 0.09
CD44-222	ENST00000526025	TMEM182	Q6ZP80	229 aa	Predicted RBP	15.63	■□□□□ 0.09
CD44-222	ENST00000526025	RBPMS2	Q6ZRY4	209 aa	Known RBP	15.63	■□□□□ 0.09
CD44-222	ENST00000526025	INO80E	Q8NBZ0	244 aa	Predicted RBP	15.63	■□□□□ 0.09
CD44-222	ENST00000526025	RNF2	Q99496	336 aa		15.63	■□□□□ 0.09
CD44-222	ENST00000526025	PARD6G	Q9BYG4	376 aa	Predicted RBP	15.63	■□□□□ 0.09
CD44-222	ENST00000526025	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	15.63	■□□□□ 0.09
CD44-222	ENST00000526025	TNFSF18	Q9UNG2	199 aa		15.63	■□□□□ 0.09
CD44-222	ENST00000526025	IZUMO1R	A6ND01	250 aa		15.62	■□□□□ 0.09
CD44-222	ENST00000526025	APOH	P02749	345 aa	Predicted RBP	15.62	■□□□□ 0.09
CD44-222	ENST00000526025	LINC00869	P0C866	280 aa		15.62	■□□□□ 0.09
CD44-222	ENST00000526025	GATA2	P23769	480 aa	Predicted RBP	15.62	■□□□□ 0.09
CD44-222	ENST00000526025	RPL29	P47914	159 aa	Known RBP	15.62	■□□□□ 0.09
CD44-222	ENST00000526025	CLINT1	Q14677	625 aa		15.62	■□□□□ 0.09
CD44-222	ENST00000526025	OPCML	Q14982	345 aa		15.62	■□□□□ 0.09
CD44-222	ENST00000526025	C1orf194	Q5T5A4	169 aa		15.62	■□□□□ 0.09
CD44-222	ENST00000526025	S100A7A	Q86SG5	101 aa		15.62	■□□□□ 0.09
CD44-222	ENST00000526025	SPAG8	Q99932	426 aa	Predicted RBP	15.62	■□□□□ 0.09
CD44-222	ENST00000526025	PBDC1	Q9BVG4	233 aa		15.62	■□□□□ 0.09
CD44-222	ENST00000526025	GGTLC1	Q9BX51	225 aa		15.62	■□□□□ 0.09
CD44-222	ENST00000526025	MEGF8	Q7Z7M0	2845 aa		15.62	■□□□□ 0.09
CD44-222	ENST00000526025	FXYD6-FXYD2	A0A087WZ82	144 aa		15.61	■□□□□ 0.09
CD44-222	ENST00000526025	IGHV3-49	A0A0A0MS15	119 aa		15.61	■□□□□ 0.09
CD44-222	ENST00000526025	ZNF785	A8K8V0	405 aa		15.61	■□□□□ 0.09
CD44-222	ENST00000526025	BUB3	O43684	328 aa		15.61	■□□□□ 0.09
CD44-222	ENST00000526025	FGF7	P21781	194 aa		15.61	■□□□□ 0.09
CD44-222	ENST00000526025	PRR20E	P86478	221 aa		15.61	■□□□□ 0.09
CD44-222	ENST00000526025	PRR20C	P86479	221 aa		15.61	■□□□□ 0.09
CD44-222	ENST00000526025	PRR20D	P86480	221 aa		15.61	■□□□□ 0.09

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms