RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TMEM269A0A1B0GVZ9 245 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 C9JAW5 83 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 F6UZH7 168 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 LGALS9O00182 355 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 GGCTO75223 188 aaKnown RBP3.33□□□□□ -1.88
CD44-220ENST00000525688 OR2H2O95918 312 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 IFNA7P01567 189 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 UQCRHP07919 91 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 SCTP09683 121 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 SCGB1C2P0DMR2 95 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 PPIBP23284 216 aaKnown RBP3.33□□□□□ -1.88
CD44-220ENST00000525688 CMPK1P30085 196 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 INPP1P49441 399 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 AKR1D1P51857 326 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 DEFA3P59666 94 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 PPP1CAP62136 330 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 NCS1P62166 190 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 CAV1Q03135 178 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 MMDQ15546 238 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 OR8G1Q15617 311 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 RSPO1Q2MKA7 263 aaPredicted RBP3.33□□□□□ -1.88
CD44-220ENST00000525688 ORMDL2Q53FV1 153 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 SPANXN3Q5MJ09 141 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 UNQ9165/PRO28630Q6UXU0 137 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 MDP1Q86V88 176 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 ZNF584Q8IVC4 421 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 PDZD9Q8IXQ8 264 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 CD177Q8N6Q3 437 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 OR5W2Q8NH69 310 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 SCGB1C1Q8TD33 95 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 NMNAT3Q96T66 252 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 NRTNQ99748 197 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 THTPAQ9BU02 230 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 SMIM3Q9BZL3 60 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 COMMD5Q9GZQ3 224 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 LPAR5Q9H1C0 372 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 GTSF1LQ9H1H1 148 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 KCNIP2Q9NS61 270 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 TNFRSF19Q9NS68 423 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 FAIMQ9NVQ4 179 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 LAMTOR3Q9UHA4 124 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 HIGD1AQ9Y241 93 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 MED31Q9Y3C7 131 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 FAM208BQ5VWN6 2430 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 IGHV5-51A0A0C4DH38 117 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 A0A0X1KG70 313 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 TLCD2A6NGC4 264 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 ZNF705GA8MUZ8 300 aaPredicted RBP3.32□□□□□ -1.88
CD44-220ENST00000525688 C4orf51C9J302 202 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 M0R381 172 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 FSTL3O95633 263 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 IGLV2-8P01709 118 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 C1QAP02745 245 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 IMPA1P29218 277 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 S100A11P31949 105 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 GABRA3P34903 492 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 GABRA2P47869 451 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 IGLV3-21P80748 117 aaPredicted RBP3.32□□□□□ -1.88
CD44-220ENST00000525688 BIKQ13323 160 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 TMEM69Q5SWH9 247 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 HRCT1Q6UXD1 115 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 ZNF429Q86V71 674 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 OR8I2Q8N0Y5 310 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 MMGT1Q8N4V1 131 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 KRTCAP2Q8N6L1 136 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 LINC01555Q8NAE3 123 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 OR4E2Q8NGC2 313 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 LCN9Q8WX39 176 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 TP53RKQ96S44 253 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 MED28Q9H204 178 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 CACYBPQ9HB71 228 aaKnown RBP3.32□□□□□ -1.88
CD44-220ENST00000525688 TAAR3PQ9P1P4 343 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 NAT8BQ9UHF3 227 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 TRAPPC2LQ9UL33 140 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 CYSLTR1Q9Y271 337 aa3.32□□□□□ -1.88
CD44-220ENST00000525688 SDK2Q58EX2 2172 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 BSNQ9UPA5 3926 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 A0A1B0GW64 132 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 C20orf202A1L168 122 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 FABP5P3A8MUU1 101 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 KRBOX1C9JBD0 128 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 M0R2Z0 102 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 TRAF3IP2O43734 574 aaPredicted RBP3.31□□□□□ -1.88
CD44-220ENST00000525688 DEDDO75618 318 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 CXorf1O96002 111 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 HSPB1P04792 205 aaKnown RBP3.31□□□□□ -1.88
CD44-220ENST00000525688 PEBP1P30086 187 aaKnown RBP3.31□□□□□ -1.88
CD44-220ENST00000525688 LPAR6P43657 344 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 LINC00313P59037 77 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 DHRS2Q13268 280 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 CCSMST1Q4G0I0 132 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 Q6Q795 121 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 Q6ZS49 121 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 RNF165Q6ZSG1 346 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 HSD17B13Q7Z5P4 300 aaPredicted RBP3.31□□□□□ -1.88
CD44-220ENST00000525688 MKXQ8IYA7 352 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 TCTE3Q8IZS6 198 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 OR51T1Q8NGJ9 327 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 SLC25A40Q8TBP6 338 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 ISOC1Q96CN7 298 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms