RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 RBMY1EA6NEQ0 496 aaKnown RBP3.38□□□□□ -1.87
NUP54-206ENST00000508465 CRYM-AS1A6NIL9 109 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 LGALS9O00182 355 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CYB5BO43169 146 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 TGOLN2O43493 480 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CDS2O95674 445 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 MT-CO2P00403 227 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CTSGP08311 255 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CD7P09564 240 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 RBMY1DP0C7P1 496 aaKnown RBP3.38□□□□□ -1.87
NUP54-206ENST00000508465 UCP1P25874 307 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 S100A5P33763 92 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CCR6P51684 374 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CD81P60033 236 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 SUPT4H1P63272 117 aaKnown RBP3.38□□□□□ -1.87
NUP54-206ENST00000508465 ERHP84090 104 aaKnown RBP3.38□□□□□ -1.87
NUP54-206ENST00000508465 PRCDQ00LT1 54 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 SSBP1Q04837 148 aaKnown RBP3.38□□□□□ -1.87
NUP54-206ENST00000508465 TMEM187Q14656 261 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 ZNF79Q15937 498 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 ZNF57Q68EA5 555 aaPredicted RBP3.38□□□□□ -1.87
NUP54-206ENST00000508465 LCN12Q6JVE5 192 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 BTNL8Q6UX41 500 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 TMED4Q7Z7H5 227 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CCDC190Q86UF4 302 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 SGPP2Q8IWX5 399 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 TMEM61Q8N0U2 210 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 ARL6IP6Q8N6S5 226 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 SLC35G3Q8N808 338 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 OR1P1Q8NH06 330 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 OR5B3Q8NH48 314 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 ZNF414Q96IQ9 312 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 UHRF2Q96PU4 802 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 TSC22D3Q99576 134 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 PRRT1Q99946 306 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 FAM110AQ9BQ89 295 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 NEURL2Q9BR09 285 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 TMEM222Q9H0R3 208 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 PLEKHA3Q9HB20 300 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 RETNQ9HD89 108 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.38□□□□□ -1.87
NUP54-206ENST00000508465 SIGLEC8Q9NYZ4 499 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 THYN1Q9P016 225 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CACNG5Q9UF02 275 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 SCP2D1Q9UJQ7 156 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 KCNIP3Q9Y2W7 256 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 V9GYH0 126 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 CEBPZOSA8MTT3 80 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 OR11H12B2RN74 326 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 NUPL2O15504 423 aaKnown RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 ATG12O94817 140 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 TMEM50AO95807 157 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 APOHP02749 345 aaPredicted RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 C8orf88P0DMB2 117 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 RNASE2P10153 161 aaKnown RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 TFPI2P48307 235 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 HOXA1P49639 335 aaPredicted RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 SUB1P53999 127 aaKnown RBP eCLIP3.37□□□□□ -1.87
NUP54-206ENST00000508465 SPCS3P61009 180 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 DHODHQ02127 395 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 HAGHQ16775 308 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 ANKRD55Q3KP44 614 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 SPANXN2Q5MJ10 180 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 THOC7Q6I9Y2 204 aaKnown RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 HSD17B13Q7Z5P4 300 aaPredicted RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 GTSCR1Q86UQ5 136 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 TOMM5Q8N4H5 51 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 GBGT1Q8N5D6 347 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 RBPMSQ93062 196 aaKnown RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 BSCL2Q96G97 398 aaPredicted RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 RCHY1Q96PM5 261 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 ATP6V0BQ99437 205 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 SDHCQ99643 169 aaPredicted RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 ZNF436Q9C0F3 470 aaPredicted RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 RBKSQ9H477 322 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 FNDC4Q9H6D8 234 aaPredicted RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 ENY2Q9NPA8 101 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 TECRQ9NZ01 308 aaKnown RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 RABL2AQ9UBK7 228 aaPredicted RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 UBQLN2Q9UHD9 624 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 RABL2BQ9UNT1 228 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 FLVCR2Q9UPI3 526 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 UFC1Q9Y3C8 167 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 TMEM56-RWDD3S4R434 201 aa3.37□□□□□ -1.87
NUP54-206ENST00000508465 HUWE1Q7Z6Z7 4374 aaKnown RBP3.37□□□□□ -1.87
NUP54-206ENST00000508465 IGLV5-52A0A0A0MRZ9 124 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 A0A1B0GU03 582 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 NDUFA4O00483 81 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 GNG7O60262 68 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 SULT1A3P0DMM9 295 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 SULT1A4P0DMN0 295 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 INPP1P49441 399 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 AP3S2P59780 193 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 PPP1R1AQ13522 171 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 SURF2Q15527 256 aaPredicted RBP3.36□□□□□ -1.87
NUP54-206ENST00000508465 TIGITQ495A1 244 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 TOMM20LQ6UXN7 152 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 PQLC2Q6ZP29 291 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 FAM219AQ8IW50 185 aa3.36□□□□□ -1.87
NUP54-206ENST00000508465 NHLRC2Q8NBF2 726 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms