RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 K7EIM0 57 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 NUPL2O15504 423 aaKnown RBP11.8□□□□□ -0.52
VIM-208ENST00000497849 DFFBO76075 338 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 IFNA21P01568 189 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 IFNA17P01571 189 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 OR13C7P0DN81 318 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 TMEM41BQ5BJD5 291 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 H2BFWTQ7Z2G1 175 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 LYZL2Q7Z4W2 148 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 AKAP14Q86UN6 197 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 UBE2DNLQ8IWF7 75 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 STHQ8IWL8 128 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 LILRB2Q8N423 598 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 CSNK1G2-AS1Q8NCQ2 148 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 GPR146Q96CH1 333 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 TMEM56Q96MV1 263 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 QTRT1Q9BXR0 403 aaKnown RBP11.8□□□□□ -0.52
VIM-208ENST00000497849 MS4A6AQ9H2W1 248 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 SHPKQ9UHJ6 478 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 TMEM56-RWDD3S4R434 201 aa11.8□□□□□ -0.52
VIM-208ENST00000497849 TRAV14DV4A0A0A6YYC5 116 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 DBX1A6NMT0 343 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 CYB5BO43169 146 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 B3GALNT1O75752 331 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 SULT1A3P0DMM9 295 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 SULT1A4P0DMN0 295 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 PAFAH1B2P68402 229 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 Q56UQ5 140 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 AIFM2Q9BRQ8 373 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 CLEC5AQ9NY25 188 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 MGAT4CQ9UBM8 478 aa11.79□□□□□ -0.52
VIM-208ENST00000497849 F11RQ9Y624 299 aaKnown RBP11.79□□□□□ -0.52
VIM-208ENST00000497849 CCNKO75909 580 aa11.78□□□□□ -0.52
VIM-208ENST00000497849 YIF1AO95070 293 aa11.78□□□□□ -0.52
VIM-208ENST00000497849 P0C879 139 aa11.78□□□□□ -0.52
VIM-208ENST00000497849 AKR1C2P52895 323 aa11.78□□□□□ -0.52
VIM-208ENST00000497849 SRPXP78539 464 aa11.78□□□□□ -0.52
VIM-208ENST00000497849 MORN3Q6PF18 240 aaPredicted RBP11.78□□□□□ -0.52
VIM-208ENST00000497849 LGI3Q8N145 548 aa11.78□□□□□ -0.52
VIM-208ENST00000497849 SLC35G3Q8N808 338 aa11.78□□□□□ -0.52
VIM-208ENST00000497849 RNASE11Q8TAA1 199 aaKnown RBP11.78□□□□□ -0.52
VIM-208ENST00000497849 RBPMSQ93062 196 aaKnown RBP11.78□□□□□ -0.52
VIM-208ENST00000497849 TEX50A0A1B0GTY4 177 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 GOSR2O14653 212 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 SNAPC5O75971 98 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 APOHP02749 345 aaPredicted RBP11.77□□□□□ -0.53
VIM-208ENST00000497849 HOXB5P09067 269 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 SPP1P10451 314 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 RELQ04864 619 aaPredicted RBP11.77□□□□□ -0.53
VIM-208ENST00000497849 OR11H7Q8NGC8 314 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 ST8SIA2Q92186 375 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 RRNAD1Q96FB5 475 aaKnown RBP11.77□□□□□ -0.53
VIM-208ENST00000497849 HINT2Q9BX68 163 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 VSIRQ9H7M9 311 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 TMEM14BQ9NUH8 114 aa11.77□□□□□ -0.53
VIM-208ENST00000497849 TRAV2A0A0B4J234 112 aa11.76□□□□□ -0.53
VIM-208ENST00000497849 PIGBOS1A0A0B4J2F0 54 aa11.76□□□□□ -0.53
VIM-208ENST00000497849 DNASE2O00115 360 aaPredicted RBP11.76□□□□□ -0.53
VIM-208ENST00000497849 ADAP1O75689 374 aa11.76□□□□□ -0.53
VIM-208ENST00000497849 FGF2P09038 288 aa11.76□□□□□ -0.53
VIM-208ENST00000497849 SPINK9Q5DT21 86 aa11.76□□□□□ -0.53
VIM-208ENST00000497849 THOC7Q6I9Y2 204 aaKnown RBP11.76□□□□□ -0.53
VIM-208ENST00000497849 HSD17B13Q7Z5P4 300 aaPredicted RBP11.76□□□□□ -0.53
VIM-208ENST00000497849 LRTM2Q8N967 370 aa11.76□□□□□ -0.53
VIM-208ENST00000497849 OR4A16Q8NH70 328 aa11.76□□□□□ -0.53
VIM-208ENST00000497849 IL22RA2Q969J5 263 aa11.76□□□□□ -0.53
VIM-208ENST00000497849 OR51B2Q9Y5P1 312 aa11.76□□□□□ -0.53
VIM-208ENST00000497849 ATG12O94817 140 aa11.75□□□□□ -0.53
VIM-208ENST00000497849 NXPH3O95157 252 aa11.75□□□□□ -0.53
VIM-208ENST00000497849 CD5P06127 495 aa11.75□□□□□ -0.53
VIM-208ENST00000497849 CXCL3P19876 107 aa11.75□□□□□ -0.53
VIM-208ENST00000497849 RNF212Q495C1 297 aa11.75□□□□□ -0.53
VIM-208ENST00000497849 NDUFA4L2Q9NRX3 87 aa11.75□□□□□ -0.53
VIM-208ENST00000497849 CACNG5Q9UF02 275 aa11.75□□□□□ -0.53
VIM-208ENST00000497849 IGHV3-66A0A0C4DH42 116 aa11.74□□□□□ -0.53
VIM-208ENST00000497849 KNCNA6PVL3 124 aa11.74□□□□□ -0.53
VIM-208ENST00000497849 ST8SIA3O43173 380 aa11.74□□□□□ -0.53
VIM-208ENST00000497849 NPY1RP25929 384 aa11.74□□□□□ -0.53
VIM-208ENST00000497849 GGNBP1Q5YKI7 109 aa11.74□□□□□ -0.53
VIM-208ENST00000497849 LSM10Q969L4 123 aaKnown RBP11.74□□□□□ -0.53
VIM-208ENST00000497849 PPP1R14BQ96C90 147 aa11.74□□□□□ -0.53
VIM-208ENST00000497849 ST6GAL2Q96JF0 529 aa11.74□□□□□ -0.53
VIM-208ENST00000497849 PRNDQ9UKY0 176 aa11.74□□□□□ -0.53
VIM-208ENST00000497849 FAT1Q14517 4588 aa11.74□□□□□ -0.53
VIM-208ENST00000497849 DUXBA0A1W2PPF3 345 aa11.73□□□□□ -0.53
VIM-208ENST00000497849 C5orf51A6NDU8 294 aa11.73□□□□□ -0.53
VIM-208ENST00000497849 FAM25EA8MYX2 175 aa11.73□□□□□ -0.53
VIM-208ENST00000497849 CCSO14618 274 aa11.73□□□□□ -0.53
VIM-208ENST00000497849 SIX6O95475 246 aa11.73□□□□□ -0.53
VIM-208ENST00000497849 GIPP09681 153 aaPredicted RBP11.73□□□□□ -0.53
VIM-208ENST00000497849 NMSQ5H8A3 153 aa11.73□□□□□ -0.53
VIM-208ENST00000497849 GSG1LQ6UXU4 331 aa11.73□□□□□ -0.53
VIM-208ENST00000497849 OR1L8Q8NGR8 309 aa11.73□□□□□ -0.53
VIM-208ENST00000497849 RABAC1Q9UI14 185 aa11.73□□□□□ -0.53
VIM-208ENST00000497849 K7EQG2 157 aa11.72□□□□□ -0.53
VIM-208ENST00000497849 RAP2BP61225 183 aa11.72□□□□□ -0.53
VIM-208ENST00000497849 HSPE1P61604 102 aaKnown RBP11.72□□□□□ -0.53
VIM-208ENST00000497849 RPL11P62913 178 aaKnown RBP11.72□□□□□ -0.53
VIM-208ENST00000497849 CD300CQ08708 224 aa11.72□□□□□ -0.53
VIM-208ENST00000497849 TOMM20LQ6UXN7 152 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms