RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 RNF125Q96EQ8 232 aa11.55□□□□□ -0.56
HDAC4-213ENST00000496347 CXorf65A6NEN9 183 aa11.54□□□□□ -0.56
HDAC4-213ENST00000496347 ZFP92A6NM28 416 aa11.54□□□□□ -0.56
HDAC4-213ENST00000496347 RAB11AP62491 216 aa11.54□□□□□ -0.56
HDAC4-213ENST00000496347 RPP30P78346 268 aaKnown RBP11.54□□□□□ -0.56
HDAC4-213ENST00000496347 TMEM41BQ5BJD5 291 aa11.54□□□□□ -0.56
HDAC4-213ENST00000496347 OR8G2PQ6IF36 304 aa11.54□□□□□ -0.56
HDAC4-213ENST00000496347 STHQ8IWL8 128 aa11.54□□□□□ -0.56
HDAC4-213ENST00000496347 C11orf68Q9H3H3 251 aaKnown RBP11.54□□□□□ -0.56
HDAC4-213ENST00000496347 PFDN2Q9UHV9 154 aa11.54□□□□□ -0.56
HDAC4-213ENST00000496347 BUB3O43684 328 aa11.53□□□□□ -0.56
HDAC4-213ENST00000496347 ZNF688P0C7X2 276 aa11.53□□□□□ -0.56
HDAC4-213ENST00000496347 SPP1P10451 314 aa11.53□□□□□ -0.56
HDAC4-213ENST00000496347 IAPPP10997 89 aa11.53□□□□□ -0.56
HDAC4-213ENST00000496347 PSG1P11464 419 aa11.53□□□□□ -0.56
HDAC4-213ENST00000496347 DHRS2Q13268 280 aa11.53□□□□□ -0.56
HDAC4-213ENST00000496347 GAMTQ14353 236 aa11.53□□□□□ -0.56
HDAC4-213ENST00000496347 BAK1Q16611 211 aa11.53□□□□□ -0.56
HDAC4-213ENST00000496347 TRPT1Q86TN4 253 aaKnown RBP11.53□□□□□ -0.56
HDAC4-213ENST00000496347 C7orf50Q9BRJ6 194 aaKnown RBP11.53□□□□□ -0.56
HDAC4-213ENST00000496347 SEPSECSQ9HD40 501 aaKnown RBP11.53□□□□□ -0.56
HDAC4-213ENST00000496347 NRN1Q9NPD7 142 aa11.53□□□□□ -0.56
HDAC4-213ENST00000496347 CENPXA8MT69 81 aa11.52□□□□□ -0.57
HDAC4-213ENST00000496347 SYNGR2O43760 224 aa11.52□□□□□ -0.57
HDAC4-213ENST00000496347 SNRPD3P62318 126 aaKnown RBP11.52□□□□□ -0.57
HDAC4-213ENST00000496347 MORN3Q6PF18 240 aaPredicted RBP11.52□□□□□ -0.57
HDAC4-213ENST00000496347 SIGLEC15Q6ZMC9 328 aa11.52□□□□□ -0.57
HDAC4-213ENST00000496347 COQ8AQ8NI60 647 aa11.52□□□□□ -0.57
HDAC4-213ENST00000496347 TRGV9Q99603 122 aa11.52□□□□□ -0.57
HDAC4-213ENST00000496347 RARRES2Q99969 163 aa11.52□□□□□ -0.57
HDAC4-213ENST00000496347 IGKV1D-37A0A075B6S9 117 aa11.51□□□□□ -0.57
HDAC4-213ENST00000496347 C9orf170A2RU37 121 aa11.51□□□□□ -0.57
HDAC4-213ENST00000496347 HOXB5P09067 269 aa11.51□□□□□ -0.57
HDAC4-213ENST00000496347 EWSR1Q01844 656 aaKnown RBP eCLIP11.51□□□□□ -0.57
HDAC4-213ENST00000496347 PMS2P11Q13670 270 aa11.51□□□□□ -0.57
HDAC4-213ENST00000496347 GGNBP1Q5YKI7 109 aa11.51□□□□□ -0.57
HDAC4-213ENST00000496347 OR11H2Q8NH07 326 aa11.51□□□□□ -0.57
HDAC4-213ENST00000496347 SDHCQ99643 169 aaPredicted RBP11.51□□□□□ -0.57
HDAC4-213ENST00000496347 NDUFA13Q9P0J0 144 aa11.51□□□□□ -0.57
HDAC4-213ENST00000496347 IL7P13232 177 aa11.5□□□□□ -0.57
HDAC4-213ENST00000496347 BTCP35070 178 aa11.5□□□□□ -0.57
HDAC4-213ENST00000496347 ZNF90Q03938 601 aa11.5□□□□□ -0.57
HDAC4-213ENST00000496347 PSMG4Q5JS54 123 aa11.5□□□□□ -0.57
HDAC4-213ENST00000496347 C1orf194Q5T5A4 169 aa11.5□□□□□ -0.57
HDAC4-213ENST00000496347 THAP8Q8NA92 274 aa11.5□□□□□ -0.57
HDAC4-213ENST00000496347 PBDC1Q9BVG4 233 aa11.5□□□□□ -0.57
HDAC4-213ENST00000496347 MAGT1Q9H0U3 335 aa11.5□□□□□ -0.57
HDAC4-213ENST00000496347 FBXL17Q9UF56 701 aa11.5□□□□□ -0.57
HDAC4-213ENST00000496347 PAIP2BQ9ULR5 123 aaKnown RBP11.5□□□□□ -0.57
HDAC4-213ENST00000496347 PRSS46E5RG02 174 aa11.49□□□□□ -0.57
HDAC4-213ENST00000496347 CFDP00746 253 aaPredicted RBP11.49□□□□□ -0.57
HDAC4-213ENST00000496347 OR4E1P0C645 316 aa11.49□□□□□ -0.57
HDAC4-213ENST00000496347 LYZP61626 148 aa11.49□□□□□ -0.57
HDAC4-213ENST00000496347 CNPY1Q3B7I2 92 aa11.49□□□□□ -0.57
HDAC4-213ENST00000496347 ACTL10Q5JWF8 245 aa11.49□□□□□ -0.57
HDAC4-213ENST00000496347 MFFQ9GZY8 342 aa11.49□□□□□ -0.57
HDAC4-213ENST00000496347 HYDINQ4G0P3 5121 aa11.49□□□□□ -0.57
HDAC4-213ENST00000496347 KNCNA6PVL3 124 aa11.48□□□□□ -0.57
HDAC4-213ENST00000496347 SNRPGP15A8MWD9 76 aa11.48□□□□□ -0.57
HDAC4-213ENST00000496347 WRBO00258 174 aa11.48□□□□□ -0.57
HDAC4-213ENST00000496347 IFNA21P01568 189 aa11.48□□□□□ -0.57
HDAC4-213ENST00000496347 C4orf46Q504U0 113 aa11.48□□□□□ -0.57
HDAC4-213ENST00000496347 SAMD13Q5VXD3 122 aa11.48□□□□□ -0.57
HDAC4-213ENST00000496347 CEMP1Q6PRD7 247 aaPredicted RBP11.48□□□□□ -0.57
HDAC4-213ENST00000496347 SLC45A2Q9UMX9 530 aa11.48□□□□□ -0.57
HDAC4-213ENST00000496347 KLK5Q9Y337 293 aaPredicted RBP11.48□□□□□ -0.57
HDAC4-213ENST00000496347 STRAPQ9Y3F4 350 aaKnown RBP11.48□□□□□ -0.57
HDAC4-213ENST00000496347 IGKV1OR2-108A0A075B7D4 117 aa11.47□□□□□ -0.57
HDAC4-213ENST00000496347 ADAP1O75689 374 aa11.47□□□□□ -0.57
HDAC4-213ENST00000496347 GIG44P09565 113 aaPredicted RBP11.47□□□□□ -0.57
HDAC4-213ENST00000496347 ANXA7P20073 488 aaKnown RBP11.47□□□□□ -0.57
HDAC4-213ENST00000496347 C4BPBP20851 252 aa11.47□□□□□ -0.57
HDAC4-213ENST00000496347 ID3Q02535 119 aa11.47□□□□□ -0.57
HDAC4-213ENST00000496347 SPANXN5Q5MJ07 72 aa11.47□□□□□ -0.57
HDAC4-213ENST00000496347 ACOT7LQ6ZUV0 252 aa11.47□□□□□ -0.57
HDAC4-213ENST00000496347 OR4D5Q8NGN0 318 aa11.47□□□□□ -0.57
HDAC4-213ENST00000496347 LINC00476Q8WZB0 136 aa11.47□□□□□ -0.57
HDAC4-213ENST00000496347 FLVCR2Q9UPI3 526 aa11.47□□□□□ -0.57
HDAC4-213ENST00000496347 LINC00854A0A1B0GVQ3 168 aa11.46□□□□□ -0.57
HDAC4-213ENST00000496347 H3BP45 60 aa11.46□□□□□ -0.57
HDAC4-213ENST00000496347 S100A7P31151 101 aa11.46□□□□□ -0.57
HDAC4-213ENST00000496347 NKX2-1P43699 371 aaPredicted RBP11.46□□□□□ -0.57
HDAC4-213ENST00000496347 PSMB3P49720 205 aa11.46□□□□□ -0.57
HDAC4-213ENST00000496347 NUTF2P61970 127 aaKnown RBP11.46□□□□□ -0.57
HDAC4-213ENST00000496347 AKR1C1Q04828 323 aa11.46□□□□□ -0.57
HDAC4-213ENST00000496347 RAB40CQ96S21 281 aa11.46□□□□□ -0.57
HDAC4-213ENST00000496347 C20orf85Q9H1P6 137 aa11.46□□□□□ -0.57
HDAC4-213ENST00000496347 ZNF705EA8MWA4 302 aaPredicted RBP11.45□□□□□ -0.58
HDAC4-213ENST00000496347 SSSCA1O60232 199 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 HLA-DRB4P13762 266 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 MIFP14174 115 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 POLR2GP62487 172 aaKnown RBP eCLIP11.45□□□□□ -0.58
HDAC4-213ENST00000496347 OR2F1Q13607 317 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 Q8NAQ8 132 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 BPIFCQ8NFQ6 507 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 C11orf45Q8TAV5 145 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 MITD1Q8WV92 249 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 PPP1R14BQ96C90 147 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 C1QTNF4Q9BXJ3 329 aa11.45□□□□□ -0.58
HDAC4-213ENST00000496347 HLA-DRB4X5D2U9 266 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms