RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MEF2CQ06413 473 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 TMEM249Q2WGJ8 235 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 GDF5OSQ5U4N7 250 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 OR5AN1Q8NGI8 311 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 FNDC4Q9H6D8 234 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 NDUFA4L2Q9NRX3 87 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 IGLV2-8P01709 118 aa13.3□□□□□ -0.28
CCDC88B-210ENST00000494566 TNXAQ16473 311 aa13.3□□□□□ -0.28
CCDC88B-210ENST00000494566 Q8N976 141 aa13.3□□□□□ -0.28
CCDC88B-210ENST00000494566 OSR1Q8TAX0 266 aaPredicted RBP13.3□□□□□ -0.28
CCDC88B-210ENST00000494566 ZNF835Q9Y2P0 537 aa13.3□□□□□ -0.28
CCDC88B-210ENST00000494566 CX3CL1P78423 397 aa13.3□□□□□ -0.28
CCDC88B-210ENST00000494566 ZNF331Q9NQX6 463 aaPredicted RBP13.3□□□□□ -0.28
CCDC88B-210ENST00000494566 AREGP15514 252 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 ZNF138P52744 262 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 CD69Q07108 199 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 C2orf83Q53S99 150 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 OR5B3Q8NH48 314 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 TSKUQ8WUA8 353 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 ZFHX3Q15911 3703 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 SPTAN1Q13813 2472 aaKnown RBP13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 IGHV1-69-2A0A0G2JMI3 117 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 SIAH2O43255 324 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 COX7A2P2O60397 106 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 PMCHL2Q9BQD1 86 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 UNQ5815/PRO19632Q6UWF5 114 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 OR4C13Q8NGP0 309 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 OR1L8Q8NGR8 309 aa13.29□□□□□ -0.28
CCDC88B-210ENST00000494566 TNFRSF13BO14836 293 aaPredicted RBP13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 IGLV2-23P01705 113 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 NIT1Q86X76 327 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 OR1B1Q8NGR6 318 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 BORCS7Q96B45 105 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 KCNS1Q96KK3 526 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 CLEC7AQ9BXN2 247 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 AMMECR1Q9Y4X0 333 aaPredicted RBP13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 HSBP1O75506 76 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 HNRNPA3P51991 378 aaKnown RBP13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 ERHP84090 104 aaKnown RBP13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 CDSNQ15517 529 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 TMEM177Q53S58 311 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 SLC25A33Q9BSK2 321 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 SLC25A2Q9BXI2 301 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 TMEM167BQ9NRX6 74 aa13.28□□□□□ -0.28
CCDC88B-210ENST00000494566 K7ENP7 123 aa13.27□□□□□ -0.28
CCDC88B-210ENST00000494566 ZNF324O75467 553 aaPredicted RBP13.27□□□□□ -0.28
CCDC88B-210ENST00000494566 C8orf88P0DMB2 117 aa13.27□□□□□ -0.28
CCDC88B-210ENST00000494566 IGHV1-8P0DP01 117 aa13.27□□□□□ -0.28
CCDC88B-210ENST00000494566 DNAJC4Q9NNZ3 241 aa13.27□□□□□ -0.28
CCDC88B-210ENST00000494566 TRAV8-1A0A0A6YYK1 113 aa13.27□□□□□ -0.29
CCDC88B-210ENST00000494566 C9JCJ5 164 aa13.27□□□□□ -0.29
CCDC88B-210ENST00000494566 HYPMO75409 117 aa13.27□□□□□ -0.29
CCDC88B-210ENST00000494566 COX7A1P24310 79 aa13.27□□□□□ -0.29
CCDC88B-210ENST00000494566 DLX6P56179 175 aa13.27□□□□□ -0.29
CCDC88B-210ENST00000494566 LINC00173Q6ZV60 143 aa13.27□□□□□ -0.29
CCDC88B-210ENST00000494566 C11orf52Q96A22 123 aa13.27□□□□□ -0.29
CCDC88B-210ENST00000494566 GNB1LQ9BYB4 327 aa13.27□□□□□ -0.29
CCDC88B-210ENST00000494566 VPS13CQ709C8 3753 aa13.27□□□□□ -0.29
CCDC88B-210ENST00000494566 M0R2Z0 102 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 AMY1AP04745 511 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 TMEM155Q4W5P6 130 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 C20orf144Q9BQM9 153 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 A0A1W2PPI3 338 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 HIGD1CA8MV81 97 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 DLL1O00548 723 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 CSN3P07498 182 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 ZNF841Q6ZN19 808 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 SPATA12Q7Z6I5 190 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 NUP35Q8NFH5 326 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 NUDT10Q8NFP7 164 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 NUDT11Q96G61 164 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 SLC35E1Q96K37 410 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 PAXXQ9BUH6 204 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 WASHC3Q9Y3C0 194 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 C18orf32Q8TCD1 76 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 S4R3C0 116 aa13.26□□□□□ -0.29
CCDC88B-210ENST00000494566 VSTM5A8MXK1 200 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 VWC2LB2RUY7 222 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 SLC25A5P05141 298 aaKnown RBP13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 TMEM30BQ3MIR4 351 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 PATE2Q6UY27 113 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 TMEM167AQ8TBQ9 72 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 CD3EP07766 207 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 Q0VG73 95 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 LINC00305Q7Z4B0 112 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 TMEM186Q96B77 213 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 FAM167A-AS1Q96KT0 104 aa13.25□□□□□ -0.29
CCDC88B-210ENST00000494566 CELSR1Q9NYQ6 3014 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 APOBEC3AP31941 199 aaPredicted RBP13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 PPOXP50336 477 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 TAS2R45P59539 299 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 MRGPRG-AS1Q2M3A8 158 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 C10orf113Q5VZT2 155 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 EBLN2Q6P2I7 272 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 LINC00322Q6ZN03 302 aaPredicted RBP13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 PDPNQ86YL7 162 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 PGLYRP4Q96LB8 373 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 RNF2Q99496 336 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 TXNDC17Q9BRA2 123 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 ZC2HC1AQ96GY0 325 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms