RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 SIGLEC15Q6ZMC9 328 aa16.43■□□□□ 0.22
PTPN4-211ENST00000488279 TMED4Q7Z7H5 227 aa16.43■□□□□ 0.22
PTPN4-211ENST00000488279 OR51G1Q8NGK1 321 aa16.43■□□□□ 0.22
PTPN4-211ENST00000488279 C2CD4CQ8TF44 421 aa16.43■□□□□ 0.22
PTPN4-211ENST00000488279 SEPSECSQ9HD40 501 aaKnown RBP16.43■□□□□ 0.22
PTPN4-211ENST00000488279 NRN1Q9NPD7 142 aa16.43■□□□□ 0.22
PTPN4-211ENST00000488279 PFDN2Q9UHV9 154 aa16.43■□□□□ 0.22
PTPN4-211ENST00000488279 FAM90A26D6RGX4 464 aa16.42■□□□□ 0.22
PTPN4-211ENST00000488279 MIFP14174 115 aa16.42■□□□□ 0.22
PTPN4-211ENST00000488279 C4BPBP20851 252 aa16.42■□□□□ 0.22
PTPN4-211ENST00000488279 TMEM128Q5BJH2 165 aa16.42■□□□□ 0.22
PTPN4-211ENST00000488279 TOMM5Q8N4H5 51 aa16.42■□□□□ 0.22
PTPN4-211ENST00000488279 HRH4Q9H3N8 390 aa16.42■□□□□ 0.22
PTPN4-211ENST00000488279 IGHV4-28A0A0C4DH34 117 aa16.41■□□□□ 0.22
PTPN4-211ENST00000488279 DUXBA0A1W2PPF3 345 aa16.41■□□□□ 0.22
PTPN4-211ENST00000488279 ZFP92A6NM28 416 aa16.41■□□□□ 0.22
PTPN4-211ENST00000488279 ZNF705EA8MWA4 302 aaPredicted RBP16.41■□□□□ 0.22
PTPN4-211ENST00000488279 NUP62P37198 522 aaPredicted RBP16.41■□□□□ 0.22
PTPN4-211ENST00000488279 GAMTQ14353 236 aa16.41■□□□□ 0.22
PTPN4-211ENST00000488279 RNF125Q96EQ8 232 aa16.41■□□□□ 0.22
PTPN4-211ENST00000488279 SLC35E1Q96K37 410 aa16.41■□□□□ 0.22
PTPN4-211ENST00000488279 CLEC5AQ9NY25 188 aa16.41■□□□□ 0.22
PTPN4-211ENST00000488279 RBMY1A1P0DJD3 496 aaKnown RBP16.4■□□□□ 0.22
PTPN4-211ENST00000488279 RBMY1CP0DJD4 496 aa16.4■□□□□ 0.22
PTPN4-211ENST00000488279 TCTAP57738 103 aa16.4■□□□□ 0.22
PTPN4-211ENST00000488279 NUTF2P61970 127 aaKnown RBP16.4■□□□□ 0.22
PTPN4-211ENST00000488279 RBMY1FQ15415 496 aaKnown RBP16.4■□□□□ 0.22
PTPN4-211ENST00000488279 RPP25LQ8N5L8 163 aaKnown RBP16.4■□□□□ 0.22
PTPN4-211ENST00000488279 TRIM63Q969Q1 353 aa16.4■□□□□ 0.22
PTPN4-211ENST00000488279 PBDC1Q9BVG4 233 aa16.4■□□□□ 0.22
PTPN4-211ENST00000488279 TBC1D24Q9ULP9 559 aa16.4■□□□□ 0.22
PTPN4-211ENST00000488279 C11orf94C9JXX5 98 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 PITX3O75364 302 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 FABP1P07148 127 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 RAB11AP62491 216 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 ZNF90Q03938 601 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 OR8G2PQ6IF36 304 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 CENPSQ8N2Z9 138 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 CSNK1G2-AS1Q8NCQ2 148 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 SLC25A21Q9BQT8 299 aaPredicted RBP16.39■□□□□ 0.21
PTPN4-211ENST00000488279 X6R8D5 127 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 AGRNO00468 2067 aa16.39■□□□□ 0.21
PTPN4-211ENST00000488279 VAMP1P23763 118 aa16.38■□□□□ 0.21
PTPN4-211ENST00000488279 S100A5P33763 92 aa16.38■□□□□ 0.21
PTPN4-211ENST00000488279 LRTM2Q8N967 370 aa16.38■□□□□ 0.21
PTPN4-211ENST00000488279 C1QTNF4Q9BXJ3 329 aa16.38■□□□□ 0.21
PTPN4-211ENST00000488279 SNRPGP15A8MWD9 76 aa16.37■□□□□ 0.21
PTPN4-211ENST00000488279 DEDDO75618 318 aa16.37■□□□□ 0.21
PTPN4-211ENST00000488279 SLC25A6P12236 298 aa16.37■□□□□ 0.21
PTPN4-211ENST00000488279 DEDD2Q8WXF8 326 aa16.37■□□□□ 0.21
PTPN4-211ENST00000488279 V9GYH0 126 aa16.37■□□□□ 0.21
PTPN4-211ENST00000488279 IGKV1D-37A0A075B6S9 117 aa16.36■□□□□ 0.21
PTPN4-211ENST00000488279 CCDC160A6NGH7 325 aa16.36■□□□□ 0.21
PTPN4-211ENST00000488279 IGLL5B9A064 214 aa16.36■□□□□ 0.21
PTPN4-211ENST00000488279 H3BMM0 161 aa16.36■□□□□ 0.21
PTPN4-211ENST00000488279 MED6O75586 246 aa16.36■□□□□ 0.21
PTPN4-211ENST00000488279 HLA-DMBP28068 263 aa16.36■□□□□ 0.21
PTPN4-211ENST00000488279 PAIP2BQ9ULR5 123 aaKnown RBP16.36■□□□□ 0.21
PTPN4-211ENST00000488279 TMED3Q9Y3Q3 217 aa16.36■□□□□ 0.21
PTPN4-211ENST00000488279 FRAS1Q86XX4 4008 aa16.35■□□□□ 0.21
PTPN4-211ENST00000488279 IAPPP10997 89 aa16.35■□□□□ 0.21
PTPN4-211ENST00000488279 NKX2-1P43699 371 aaPredicted RBP16.35■□□□□ 0.21
PTPN4-211ENST00000488279 RPP30P78346 268 aaKnown RBP16.35■□□□□ 0.21
PTPN4-211ENST00000488279 C1orf194Q5T5A4 169 aa16.35■□□□□ 0.21
PTPN4-211ENST00000488279 ELOA3CA0A087WX78 387 aaPredicted RBP16.34■□□□□ 0.21
PTPN4-211ENST00000488279 ID1P41134 155 aa16.34■□□□□ 0.21
PTPN4-211ENST00000488279 LYZP61626 148 aa16.34■□□□□ 0.21
PTPN4-211ENST00000488279 ZNF79Q15937 498 aa16.34■□□□□ 0.21
PTPN4-211ENST00000488279 CIB3Q96Q77 187 aaPredicted RBP16.34■□□□□ 0.21
PTPN4-211ENST00000488279 TRGV9Q99603 122 aa16.34■□□□□ 0.21
PTPN4-211ENST00000488279 XCL2Q9UBD3 114 aa16.34■□□□□ 0.21
PTPN4-211ENST00000488279 SFT2D2O95562 160 aa16.33■□□□□ 0.2
PTPN4-211ENST00000488279 HLA-DRB4P13762 266 aa16.33■□□□□ 0.2
PTPN4-211ENST00000488279 PPP1R1AQ13522 171 aa16.33■□□□□ 0.2
PTPN4-211ENST00000488279 OR2F1Q13607 317 aa16.33■□□□□ 0.2
PTPN4-211ENST00000488279 PPP1R14BQ96C90 147 aa16.33■□□□□ 0.2
PTPN4-211ENST00000488279 LINC00052Q96N35 136 aa16.33■□□□□ 0.2
PTPN4-211ENST00000488279 WDR12Q9GZL7 423 aaKnown RBP16.33■□□□□ 0.2
PTPN4-211ENST00000488279 HLA-DRB4X5D2U9 266 aa16.33■□□□□ 0.2
PTPN4-211ENST00000488279 TRAV10A0A0B4J240 114 aa16.32■□□□□ 0.2
PTPN4-211ENST00000488279 Q6ZTC4 211 aa16.32■□□□□ 0.2
PTPN4-211ENST00000488279 CCDC190Q86UF4 302 aa16.32■□□□□ 0.2
PTPN4-211ENST00000488279 MAGT1Q9H0U3 335 aa16.32■□□□□ 0.2
PTPN4-211ENST00000488279 APLNQ9ULZ1 77 aa16.32■□□□□ 0.2
PTPN4-211ENST00000488279 SYNGR2O43760 224 aa16.31■□□□□ 0.2
PTPN4-211ENST00000488279 CFDP00746 253 aaPredicted RBP16.31■□□□□ 0.2
PTPN4-211ENST00000488279 HOXB5P09067 269 aa16.31■□□□□ 0.2
PTPN4-211ENST00000488279 OR8I2Q8N0Y5 310 aa16.31■□□□□ 0.2
PTPN4-211ENST00000488279 VPS13DQ5THJ4 4388 aa16.3■□□□□ 0.2
PTPN4-211ENST00000488279 IGKV1OR2-108A0A075B7D4 117 aa16.3■□□□□ 0.2
PTPN4-211ENST00000488279 WRBO00258 174 aa16.3■□□□□ 0.2
PTPN4-211ENST00000488279 PSMB3P49720 205 aa16.3■□□□□ 0.2
PTPN4-211ENST00000488279 GGNBP1Q5YKI7 109 aa16.3■□□□□ 0.2
PTPN4-211ENST00000488279 THAP8Q8NA92 274 aa16.3■□□□□ 0.2
PTPN4-211ENST00000488279 COQ8AQ8NI60 647 aa16.3■□□□□ 0.2
PTPN4-211ENST00000488279 IGKV3-20P01619 116 aa16.29■□□□□ 0.2
PTPN4-211ENST00000488279 SPANXN2Q5MJ10 180 aa16.29■□□□□ 0.2
PTPN4-211ENST00000488279 GDF5OSQ5U4N7 250 aa16.29■□□□□ 0.2
PTPN4-211ENST00000488279 FOXI2Q6ZQN5 318 aa16.29■□□□□ 0.2
PTPN4-211ENST00000488279 SAV1Q9H4B6 383 aaPredicted RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms