RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 DEFB114Q30KQ6 69 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 TIGITQ495A1 244 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 UNQ9165/PRO28630Q6UXU0 137 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 ZBTB8BQ8NAP8 495 aaPredicted RBP6.11□□□□□ -1.43
USP40-216ENST00000485943 BPIFCQ8NFQ6 507 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 OR51G1Q8NGK1 321 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 C2orf50Q96LR7 162 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 NEURL2Q9BR09 285 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 CHRDL1Q9BU40 450 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 RHPN1-AS1Q9BWJ2 59 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 ZNF436Q9C0F3 470 aaPredicted RBP6.11□□□□□ -1.43
USP40-216ENST00000485943 RCL1Q9Y2P8 373 aaKnown RBP6.11□□□□□ -1.43
USP40-216ENST00000485943 FBN3Q75N90 2809 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 PKD1L1Q8TDX9 2849 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 IGHV3-66A0A0C4DH42 116 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 IGHV7-4-1A0A0J9YVY3 117 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 TMEM213A2RRL7 107 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 HELTA6NFD8 242 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 OR11H12B2RN74 326 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 CFDP00746 253 aaPredicted RBP6.1□□□□□ -1.43
USP40-216ENST00000485943 IL5P05113 134 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 HNRNPCP07910 306 aaKnown RBP eCLIP6.1□□□□□ -1.43
USP40-216ENST00000485943 CTSGP08311 255 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 AP2S1P53680 142 aaPredicted RBP6.1□□□□□ -1.43
USP40-216ENST00000485943 RAP2BP61225 183 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 RRAS2P62070 204 aaPredicted RBP6.1□□□□□ -1.43
USP40-216ENST00000485943 LRRC37A5PQ49AS3 106 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 PVRIGQ6DKI7 326 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 TOMM20LQ6UXN7 152 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 TCF24Q7RTU0 167 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 NRARPQ7Z6K4 114 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 STXBP6Q8NFX7 210 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 ASCL2Q99929 193 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 SPAG8Q99932 426 aaPredicted RBP6.1□□□□□ -1.43
USP40-216ENST00000485943 TMEM147Q9BVK8 224 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 TBC1D24Q9ULP9 559 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 RNF24Q9Y225 148 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 DMRT1Q9Y5R6 373 aa6.1□□□□□ -1.43
USP40-216ENST00000485943 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.1□□□□□ -1.43
USP40-216ENST00000485943 TSC22D2O75157 780 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 PTTG1O95997 202 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 TOMM40O96008 361 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 METTL15P1P0C7V9 234 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 NHLRC4P0CG21 123 aaPredicted RBP6.09□□□□□ -1.43
USP40-216ENST00000485943 YPEL3P61236 119 aaPredicted RBP6.09□□□□□ -1.43
USP40-216ENST00000485943 OR2F1Q13607 317 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 MLANAQ16655 118 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 KLK9Q2XQG4 91 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 AARDQ4LEZ3 155 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 PRSS54Q6PEW0 395 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 TMEM61Q8N0U2 210 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 GBGT1Q8N5D6 347 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 SLC25A31Q9H0C2 315 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 MED28Q9H204 178 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 FNDC4Q9H6D8 234 aaPredicted RBP6.09□□□□□ -1.43
USP40-216ENST00000485943 SRD5A3Q9H8P0 318 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 MLXQ9UH92 298 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 SMPXQ9UHP9 88 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 KLK9Q9UKQ9 250 aa6.09□□□□□ -1.43
USP40-216ENST00000485943 VWFP04275 2813 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 LOC100996750A0A140TA64 210 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 MPTX1A8MV57 137 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 PITX3O75364 302 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 OR5G3P0C626 314 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 IGHV4-30-4P0DP06 118 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 ORM2P19652 201 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 P2RY1P47900 373 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 TAS2R30P59541 319 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 SNRPD3P62318 126 aaKnown RBP6.08□□□□□ -1.44
USP40-216ENST00000485943 BAXQ07812 192 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 GAMTQ14353 236 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 RGS21Q2M5E4 152 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 BSXQ3C1V8 233 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 ACOT7LQ6ZUV0 252 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 OR8I2Q8N0Y5 310 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 TMEM217Q8N7C4 229 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 ZNF709Q8N972 641 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 OR4D5Q8NGN0 318 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 OR1B1Q8NGR6 318 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 LRRC20Q8TCA0 184 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 RNF125Q96EQ8 232 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 SMIM8Q96KF7 97 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 OR10C1Q96KK4 312 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 B9D2Q9BPU9 175 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 KRTAP4-6Q9BYQ5 205 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 SLC25A22Q9H936 323 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 NPVFQ9HCQ7 196 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 FBXL17Q9UF56 701 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 UBQLN2Q9UHD9 624 aa6.08□□□□□ -1.44
USP40-216ENST00000485943 NOTCH1P46531 2555 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 IZUMO1RA6ND01 250 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 ZNF785A8K8V0 405 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 K7EPK0 472 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 CHEK1O14757 476 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 TSPAN4O14817 238 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 MBPP02686 304 aaPredicted RBP6.07□□□□□ -1.44
USP40-216ENST00000485943 FRMD6-AS1P0C7T7 363 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 IGLC1P0CG04 106 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 PSG1P11464 419 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 ID1P41134 155 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms