RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 FAM172AQ8WUF8 416 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 BORCS7Q96B45 105 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 TP53RKQ96S44 253 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 LINC00467Q9BRT7 94 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 BCL2L10Q9HD36 194 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 MED29Q9NX70 200 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 ALPK3Q96L96 1907 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 SNAPC4Q5SXM2 1469 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 MED1Q15648 1581 aaPredicted RBP0.14□□□□□ -2.39
VPS50-217ENST00000485140 CASP8AP2Q9UKL3 1982 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 WRNQ14191 1432 aaPredicted RBP eCLIP0.13□□□□□ -2.39
VPS50-217ENST00000485140 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.13□□□□□ -2.39
VPS50-217ENST00000485140 C1orf196B1AJZ1 125 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 KLF7O75840 302 aaPredicted RBP0.13□□□□□ -2.39
VPS50-217ENST00000485140 AHSA1O95433 338 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 ZNF682O95780 498 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 IFNA16P05015 189 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 PPIBP23284 216 aaKnown RBP0.13□□□□□ -2.39
VPS50-217ENST00000485140 HOXA6P31267 233 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 NKX2-5P52952 324 aaPredicted RBP0.13□□□□□ -2.39
VPS50-217ENST00000485140 DEFA1P59665 94 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 CIRBPQ14011 172 aaKnown RBP0.13□□□□□ -2.39
VPS50-217ENST00000485140 COTL1Q14019 142 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 KRTAP26-1Q6PEX3 210 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 OR10AC1Q8NH08 325 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 ZNF431Q8TF32 576 aaPredicted RBP0.13□□□□□ -2.39
VPS50-217ENST00000485140 TSKUQ8WUA8 353 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 CT55Q8WUE5 264 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 LLPHQ9BRT6 129 aaKnown RBP0.13□□□□□ -2.39
VPS50-217ENST00000485140 TAS2R7Q9NYW3 318 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 FBXO5Q9UKT4 447 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 NEO1Q92859 1461 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 KIAA1549Q9HCM3 1950 aa0.13□□□□□ -2.39
VPS50-217ENST00000485140 CYB5BO43169 146 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 CHP2O43745 196 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 GADD45GO95257 159 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 SERPINA6P08185 405 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 KDELR1P24390 212 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 OMPP47874 163 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 EIF5AP63241 154 aaKnown RBP0.12□□□□□ -2.39
VPS50-217ENST00000485140 LYRM7Q5U5X0 104 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 Q6ZS92 163 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 TEN1Q86WV5 123 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 SLC30A7Q8NEW0 376 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 CANT1Q8WVQ1 401 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 PSMF1Q92530 271 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 SLAMF6Q96DU3 332 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 C8orf76Q96K31 380 aa0.12□□□□□ -2.39
VPS50-217ENST00000485140 NOSIPQ9Y314 301 aaKnown RBP0.12□□□□□ -2.39
VPS50-217ENST00000485140 SYNE1Q8NF91 8797 aaKnown RBP0.12□□□□□ -2.39
VPS50-217ENST00000485140 hCG_1818297A0A087WSY0 165 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 A0A0D9SG42 100 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 CLDN24A6NM45 220 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 A8MT66 165 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 H3BRM9 83 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 SERPINE1P05121 402 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 SRP14P37108 136 aaKnown RBP0.11□□□□□ -2.39
VPS50-217ENST00000485140 FXYD6P3P58550 94 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 DYNLT1P63172 113 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 CDKL4Q5MAI5 379 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 C4orf22Q6V702 233 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 CLDN22Q8N7P3 220 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 LINC00052Q96N35 136 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 PRADC1Q9BSG0 188 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 RNF122Q9H9V4 155 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 TVP23BQ9NYZ1 205 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 UBAP1Q9NZ09 502 aa0.11□□□□□ -2.39
VPS50-217ENST00000485140 CHCHD2Q9Y6H1 151 aaPredicted RBP0.11□□□□□ -2.39
VPS50-217ENST00000485140 ANKRD17O75179 2603 aaKnown RBP0.11□□□□□ -2.39
VPS50-217ENST00000485140 SCN10AQ9Y5Y9 1956 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 RTL1A6NKG5 1358 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 ZNF106Q9H2Y7 1883 aaKnown RBP0.1□□□□□ -2.39
VPS50-217ENST00000485140 TRGV10A0A0A0MS01 117 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 F8W1H4 67 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 M0R378 163 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 TIMM17BO60830 172 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 C8GP07360 202 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 SMIM17P0DL12 118 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 IAH1Q2TAA2 248 aaPredicted RBP0.1□□□□□ -2.39
VPS50-217ENST00000485140 OR52L1Q8NGH7 329 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 WFDC5Q8TCV5 224 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 YPEL2Q96QA6 119 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 TRIM4Q9C037 500 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 PSTPIP2Q9H939 334 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 TMEM138Q9NPI0 162 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 JPT1Q9UK76 154 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 LY96Q9Y6Y9 160 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 MYO18AQ92614 2054 aaKnown RBP0.1□□□□□ -2.39
VPS50-217ENST00000485140 MYH10P35580 1976 aa0.1□□□□□ -2.39
VPS50-217ENST00000485140 HEATR1Q9H583 2144 aaKnown RBP0.1□□□□□ -2.39
VPS50-217ENST00000485140 ROBO3Q96MS0 1386 aa0.09□□□□□ -2.39
VPS50-217ENST00000485140 PLXND1Q9Y4D7 1925 aa0.09□□□□□ -2.39
VPS50-217ENST00000485140 FAM236DA0A1B0GTK5 79 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 hADV38S2A0JD32 116 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 A8MWV9 139 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 CNIH1O95406 144 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 FAM236CP0DP71 79 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 MYL5Q02045 173 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 C12orf74Q32Q52 190 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 Q6Q795 121 aa0.09□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms