RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 MIFP14174 115 aa15.62■□□□□ 0.09
USP40-215ENST00000484528 AP2S1P53680 142 aaPredicted RBP15.62■□□□□ 0.09
USP40-215ENST00000484528 OR1S1Q8NH92 325 aa15.62■□□□□ 0.09
USP40-215ENST00000484528 MCFD2Q8NI22 146 aa15.62■□□□□ 0.09
USP40-215ENST00000484528 RNF125Q96EQ8 232 aa15.62■□□□□ 0.09
USP40-215ENST00000484528 SOSTQ9BQB4 213 aa15.62■□□□□ 0.09
USP40-215ENST00000484528 NRN1Q9NPD7 142 aa15.62■□□□□ 0.09
USP40-215ENST00000484528 CACFD1Q9UGQ2 172 aa15.62■□□□□ 0.09
USP40-215ENST00000484528 U3KQ87 197 aa15.62■□□□□ 0.09
USP40-215ENST00000484528 ZNF705EA8MWA4 302 aaPredicted RBP15.61■□□□□ 0.09
USP40-215ENST00000484528 IGLL5B9A064 214 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 ANXA3P12429 323 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 HLA-DMBP28068 263 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 PRR20EP86478 221 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 PRR20CP86479 221 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 PRR20DP86480 221 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 PRR20BP86481 221 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 PRR20AP86496 221 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 TMED4Q7Z7H5 227 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 CSNK1G2-AS1Q8NCQ2 148 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 TBC1D24Q9ULP9 559 aa15.61■□□□□ 0.09
USP40-215ENST00000484528 ELOA3CA0A087WX78 387 aaPredicted RBP15.6■□□□□ 0.09
USP40-215ENST00000484528 SNRPD3P62318 126 aaKnown RBP15.6■□□□□ 0.09
USP40-215ENST00000484528 KLF9Q13886 244 aaPredicted RBP15.6■□□□□ 0.09
USP40-215ENST00000484528 GSG1LQ6UXU4 331 aa15.6■□□□□ 0.09
USP40-215ENST00000484528 HRH4Q9H3N8 390 aa15.6■□□□□ 0.09
USP40-215ENST00000484528 VPS13DQ5THJ4 4388 aa15.59■□□□□ 0.09
USP40-215ENST00000484528 ZFP92A6NM28 416 aa15.59■□□□□ 0.09
USP40-215ENST00000484528 DEFB1P60022 68 aa15.59■□□□□ 0.09
USP40-215ENST00000484528 SRPXP78539 464 aa15.59■□□□□ 0.09
USP40-215ENST00000484528 ZNF90Q03938 601 aa15.59■□□□□ 0.09
USP40-215ENST00000484528 Q6ZTC4 211 aa15.59■□□□□ 0.09
USP40-215ENST00000484528 SLC35E1Q96K37 410 aa15.59■□□□□ 0.09
USP40-215ENST00000484528 XCL2Q9UBD3 114 aa15.59■□□□□ 0.09
USP40-215ENST00000484528 IGKV1D-37A0A075B6S9 117 aa15.58■□□□□ 0.08
USP40-215ENST00000484528 IAPPP10997 89 aa15.58■□□□□ 0.08
USP40-215ENST00000484528 GAMTQ14353 236 aa15.58■□□□□ 0.08
USP40-215ENST00000484528 ZNF767PQ75MW2 155 aa15.58■□□□□ 0.08
USP40-215ENST00000484528 TRIM63Q969Q1 353 aa15.58■□□□□ 0.08
USP40-215ENST00000484528 APLNQ9ULZ1 77 aa15.58■□□□□ 0.08
USP40-215ENST00000484528 CELA1Q9UNI1 258 aa15.58■□□□□ 0.08
USP40-215ENST00000484528 DNAH10Q8IVF4 4471 aa15.58■□□□□ 0.08
USP40-215ENST00000484528 C11orf94C9JXX5 98 aa15.57■□□□□ 0.08
USP40-215ENST00000484528 H3BMM0 161 aa15.57■□□□□ 0.08
USP40-215ENST00000484528 VAMP1P23763 118 aa15.57■□□□□ 0.08
USP40-215ENST00000484528 FAUP35544 74 aaKnown RBP15.57■□□□□ 0.08
USP40-215ENST00000484528 LYZP61626 148 aa15.57■□□□□ 0.08
USP40-215ENST00000484528 OR2F1Q13607 317 aa15.57■□□□□ 0.08
USP40-215ENST00000484528 PYDC2Q56P42 97 aa15.57■□□□□ 0.08
USP40-215ENST00000484528 PAIP2BQ9ULR5 123 aaKnown RBP15.57■□□□□ 0.08
USP40-215ENST00000484528 IGKV3-20P01619 116 aa15.56■□□□□ 0.08
USP40-215ENST00000484528 GDF5OSQ5U4N7 250 aa15.56■□□□□ 0.08
USP40-215ENST00000484528 WDR12Q9GZL7 423 aaKnown RBP15.56■□□□□ 0.08
USP40-215ENST00000484528 HLA-DRB4P13762 266 aa15.55■□□□□ 0.08
USP40-215ENST00000484528 GPX4P36969 197 aaPredicted RBP15.55■□□□□ 0.08
USP40-215ENST00000484528 TCTAP57738 103 aa15.55■□□□□ 0.08
USP40-215ENST00000484528 OR8G2PQ6IF36 304 aa15.55■□□□□ 0.08
USP40-215ENST00000484528 TOMM5Q8N4H5 51 aa15.55■□□□□ 0.08
USP40-215ENST00000484528 V9GYH0 126 aa15.55■□□□□ 0.08
USP40-215ENST00000484528 HLA-DRB4X5D2U9 266 aa15.55■□□□□ 0.08
USP40-215ENST00000484528 TRAV10A0A0B4J240 114 aa15.54■□□□□ 0.08
USP40-215ENST00000484528 PITX3O75364 302 aa15.54■□□□□ 0.08
USP40-215ENST00000484528 NUP62P37198 522 aaPredicted RBP15.54■□□□□ 0.08
USP40-215ENST00000484528 FXYD7P58549 80 aa15.54■□□□□ 0.08
USP40-215ENST00000484528 NUTF2P61970 127 aaKnown RBP15.54■□□□□ 0.08
USP40-215ENST00000484528 TMEM128Q5BJH2 165 aa15.54■□□□□ 0.08
USP40-215ENST00000484528 CENPSQ8N2Z9 138 aa15.54■□□□□ 0.08
USP40-215ENST00000484528 LINC00052Q96N35 136 aa15.54■□□□□ 0.08
USP40-215ENST00000484528 C1QTNF4Q9BXJ3 329 aa15.54■□□□□ 0.08
USP40-215ENST00000484528 SEPSECSQ9HD40 501 aaKnown RBP15.54■□□□□ 0.08
USP40-215ENST00000484528 DUXBA0A1W2PPF3 345 aa15.53■□□□□ 0.08
USP40-215ENST00000484528 NKX2-1P43699 371 aaPredicted RBP15.53■□□□□ 0.08
USP40-215ENST00000484528 AP3S2P59780 193 aa15.53■□□□□ 0.08
USP40-215ENST00000484528 ZNF79Q15937 498 aa15.53■□□□□ 0.08
USP40-215ENST00000484528 PPP1R14BQ96C90 147 aa15.53■□□□□ 0.08
USP40-215ENST00000484528 MAGT1Q9H0U3 335 aa15.53■□□□□ 0.08
USP40-215ENST00000484528 PFDN2Q9UHV9 154 aa15.53■□□□□ 0.08
USP40-215ENST00000484528 IGHV4-4A0A075B6R2 117 aa15.52■□□□□ 0.08
USP40-215ENST00000484528 IGKV1OR2-108A0A075B7D4 117 aa15.52■□□□□ 0.08
USP40-215ENST00000484528 ATP5IP56385 69 aaPredicted RBP15.52■□□□□ 0.08
USP40-215ENST00000484528 RAB11AP62491 216 aa15.52■□□□□ 0.08
USP40-215ENST00000484528 CCDC160A6NGH7 325 aa15.51■□□□□ 0.07
USP40-215ENST00000484528 FABP1P07148 127 aa15.51■□□□□ 0.07
USP40-215ENST00000484528 PPP1R1AQ13522 171 aa15.51■□□□□ 0.07
USP40-215ENST00000484528 C12orf74Q32Q52 190 aa15.51■□□□□ 0.07
USP40-215ENST00000484528 COQ8AQ8NI60 647 aa15.51■□□□□ 0.07
USP40-215ENST00000484528 SCRT1Q9BWW7 348 aa15.51■□□□□ 0.07
USP40-215ENST00000484528 IGHV3OR16-12A0A075B7B8 117 aa15.5■□□□□ 0.07
USP40-215ENST00000484528 SNRPGP15A8MWD9 76 aa15.5■□□□□ 0.07
USP40-215ENST00000484528 WRBO00258 174 aa15.5■□□□□ 0.07
USP40-215ENST00000484528 SOCS3O14543 225 aa15.5■□□□□ 0.07
USP40-215ENST00000484528 HOXB5P09067 269 aa15.5■□□□□ 0.07
USP40-215ENST00000484528 LRTM2Q8N967 370 aa15.5■□□□□ 0.07
USP40-215ENST00000484528 OR4B1Q8NGF8 309 aa15.5■□□□□ 0.07
USP40-215ENST00000484528 TRGV9Q99603 122 aa15.5■□□□□ 0.07
USP40-215ENST00000484528 SAV1Q9H4B6 383 aaPredicted RBP15.5■□□□□ 0.07
USP40-215ENST00000484528 DEFB131BA0A096LNP1 70 aa15.49■□□□□ 0.07
USP40-215ENST00000484528 PIGBOS1A0A0B4J2F0 54 aa15.49■□□□□ 0.07
USP40-215ENST00000484528 F6UB75 175 aa15.49■□□□□ 0.07
USP40-215ENST00000484528 SFT2D2O95562 160 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms