RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TMEM182Q6ZP80 229 aaPredicted RBP9.37□□□□□ -0.91
SDC1-206ENST00000482879 C1QL4Q86Z23 238 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 DLX4Q92988 240 aaPredicted RBP9.37□□□□□ -0.91
SDC1-206ENST00000482879 ZNF414Q96IQ9 312 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 ARPC5LQ9BPX5 153 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 SLC45A2Q9UMX9 530 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 NOTCH3Q9UM47 2321 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 IGHV3OR16-8A0A075B7F1 116 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 BCL2L11O43521 198 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 SELENOTP62341 195 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 UNQ9165/PRO28630Q6UXU0 137 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 C9orf62Q8N4C0 152 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 ZNF709Q8N972 641 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 BPIFCQ8NFQ6 507 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 OR51G1Q8NGK1 321 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 SPATA3Q8NHX4 192 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 RCC1LQ96I51 464 aaKnown RBP9.36□□□□□ -0.91
SDC1-206ENST00000482879 C20orf24Q9BUV8 137 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 GGTLC1Q9BX51 225 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 NPCDR1Q9BY65 106 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 PARD6GQ9BYG4 376 aaPredicted RBP9.36□□□□□ -0.91
SDC1-206ENST00000482879 CYTL1Q9NRR1 136 aa9.36□□□□□ -0.91
SDC1-206ENST00000482879 C17orf112F2Z3M2 114 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 LGALS9O00182 355 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 OVOL1O14753 267 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 JTBO76095 146 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 CFDP00746 253 aaPredicted RBP9.35□□□□□ -0.91
SDC1-206ENST00000482879 IL4P05112 153 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 RPL29P47914 159 aaKnown RBP9.35□□□□□ -0.91
SDC1-206ENST00000482879 LYZP61626 148 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 OPCMLQ14982 345 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 MIC13Q5XKP0 118 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 LAMTOR1Q6IAA8 161 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 REC114Q7Z4M0 266 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 LINC00482Q8N8I6 264 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 HSD17B11Q8NBQ5 300 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 TMEM190Q8WZ59 177 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 RSG1Q9BU20 258 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 ZFAND3Q9H8U3 227 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 UFC1Q9Y3C8 167 aa9.35□□□□□ -0.91
SDC1-206ENST00000482879 WI2-2373I1.2A0A1W2PRP0 233 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 BOLA2-SMG1P6H3BVE0 249 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 ZNF207O43670 478 aaKnown RBP9.34□□□□□ -0.91
SDC1-206ENST00000482879 HNRNPCP07910 306 aaKnown RBP eCLIP9.34□□□□□ -0.91
SDC1-206ENST00000482879 LINC00869P0C866 280 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 TM4SF20Q53R12 229 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 STPG3Q8N7X2 389 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 OR9G4Q8NGQ1 327 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 RNF125Q96EQ8 232 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 GINS3Q9BRX5 216 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 PBDC1Q9BVG4 233 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 ZNF471Q9BX82 626 aaPredicted RBP9.34□□□□□ -0.91
SDC1-206ENST00000482879 PEMTQ9UBM1 199 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 PXMP4Q9Y6I8 212 aa9.34□□□□□ -0.91
SDC1-206ENST00000482879 K7EMT4 169 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 ORM2P19652 201 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 C4BPBP20851 252 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 ATP6V0CP27449 155 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 ELLP55199 621 aaPredicted RBP9.33□□□□□ -0.92
SDC1-206ENST00000482879 B2MP61769 119 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 PRR20EP86478 221 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 PRR20CP86479 221 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 PRR20DP86480 221 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 PRR20BP86481 221 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 PRR20AP86496 221 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 USF2Q15853 346 aaPredicted RBP9.33□□□□□ -0.92
SDC1-206ENST00000482879 Q6ZRG5 221 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 OR1B1Q8NGR6 318 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 ELOVL1Q9BW60 279 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 KCNIP2Q9NS61 270 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 SLC39A9Q9NUM3 307 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 DOK5Q9P104 306 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 RFNGQ9Y644 331 aa9.33□□□□□ -0.92
SDC1-206ENST00000482879 TMEM213A2RRL7 107 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 C2orf70A6NJV1 201 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 A8MWP6 167 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 HYPMO75409 117 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 CD33P20138 364 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 NPPCP23582 126 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 PLP1P60201 277 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 EIF5AP63241 154 aaKnown RBP9.32□□□□□ -0.92
SDC1-206ENST00000482879 FFAR4Q5NUL3 377 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 PXDC1Q5TGL8 231 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 GNPNAT1Q96EK6 184 aaPredicted RBP9.32□□□□□ -0.92
SDC1-206ENST00000482879 METTL26Q96S19 204 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 ARV1Q9H2C2 271 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 DAZ1Q9NQZ3 744 aaKnown RBP9.32□□□□□ -0.92
SDC1-206ENST00000482879 RABAC1Q9UI14 185 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 BOLA1Q9Y3E2 137 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 TIMM9Q9Y5J7 89 aa9.32□□□□□ -0.92
SDC1-206ENST00000482879 VWFP04275 2813 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 IGHV3-49A0A0A0MS15 119 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 COX7A2P2O60397 106 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 CSN3P07498 182 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 OR5G3P0C626 314 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 EDN2P20800 178 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 IL34Q6ZMJ4 242 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 WFDC9Q8NEX5 89 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 OR1L4Q8NGR5 311 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 PPP1R14BQ96C90 147 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms