RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 OR51G1Q8NGK1 321 aa12.97□□□□□ -0.33
COL9A3-212ENST00000481800 RARRES2Q99969 163 aa12.97□□□□□ -0.33
COL9A3-212ENST00000481800 PBDC1Q9BVG4 233 aa12.97□□□□□ -0.33
COL9A3-212ENST00000481800 MAGT1Q9H0U3 335 aa12.97□□□□□ -0.33
COL9A3-212ENST00000481800 NDUFA13Q9P0J0 144 aa12.97□□□□□ -0.33
COL9A3-212ENST00000481800 C9orf170A2RU37 121 aa12.96□□□□□ -0.33
COL9A3-212ENST00000481800 SYNGR2O43760 224 aa12.96□□□□□ -0.33
COL9A3-212ENST00000481800 NUP62P37198 522 aaPredicted RBP12.96□□□□□ -0.33
COL9A3-212ENST00000481800 PMS2P11Q13670 270 aa12.96□□□□□ -0.33
COL9A3-212ENST00000481800 COQ8AQ8NI60 647 aa12.96□□□□□ -0.33
COL9A3-212ENST00000481800 DCANP1Q8TF63 244 aa12.96□□□□□ -0.33
COL9A3-212ENST00000481800 GLMPQ8WWB7 406 aa12.96□□□□□ -0.33
COL9A3-212ENST00000481800 RNF125Q96EQ8 232 aa12.96□□□□□ -0.33
COL9A3-212ENST00000481800 WRBO00258 174 aa12.95□□□□□ -0.34
COL9A3-212ENST00000481800 IFNA21P01568 189 aa12.95□□□□□ -0.34
COL9A3-212ENST00000481800 C7orf50Q9BRJ6 194 aaKnown RBP12.95□□□□□ -0.34
COL9A3-212ENST00000481800 FLVCR2Q9UPI3 526 aa12.95□□□□□ -0.34
COL9A3-212ENST00000481800 BUB3O43684 328 aa12.94□□□□□ -0.34
COL9A3-212ENST00000481800 ATF4P18848 351 aaPredicted RBP12.94□□□□□ -0.34
COL9A3-212ENST00000481800 SNRPD3P62318 126 aaKnown RBP12.94□□□□□ -0.34
COL9A3-212ENST00000481800 ZNF90Q03938 601 aa12.94□□□□□ -0.34
COL9A3-212ENST00000481800 C4orf46Q504U0 113 aa12.94□□□□□ -0.34
COL9A3-212ENST00000481800 OR8G2PQ6IF36 304 aa12.94□□□□□ -0.34
COL9A3-212ENST00000481800 SIGLEC15Q6ZMC9 328 aa12.94□□□□□ -0.34
COL9A3-212ENST00000481800 OR11H2Q8NH07 326 aa12.94□□□□□ -0.34
COL9A3-212ENST00000481800 SDHCQ99643 169 aaPredicted RBP12.94□□□□□ -0.34
COL9A3-212ENST00000481800 NRN1Q9NPD7 142 aa12.94□□□□□ -0.34
COL9A3-212ENST00000481800 TENM2Q9NT68 2774 aa12.94□□□□□ -0.34
COL9A3-212ENST00000481800 KNCNA6PVL3 124 aa12.93□□□□□ -0.34
COL9A3-212ENST00000481800 SNRPGP15A8MWD9 76 aa12.93□□□□□ -0.34
COL9A3-212ENST00000481800 ADAP1O75689 374 aa12.93□□□□□ -0.34
COL9A3-212ENST00000481800 OR4E1P0C645 316 aa12.93□□□□□ -0.34
COL9A3-212ENST00000481800 LYZP61626 148 aa12.93□□□□□ -0.34
COL9A3-212ENST00000481800 EWSR1Q01844 656 aaKnown RBP eCLIP12.93□□□□□ -0.34
COL9A3-212ENST00000481800 PSMG4Q5JS54 123 aa12.93□□□□□ -0.34
COL9A3-212ENST00000481800 ACTL10Q5JWF8 245 aa12.93□□□□□ -0.34
COL9A3-212ENST00000481800 SPANXN5Q5MJ07 72 aa12.93□□□□□ -0.34
COL9A3-212ENST00000481800 IGKV1D-37A0A075B6S9 117 aa12.92□□□□□ -0.34
COL9A3-212ENST00000481800 NUPR2A6NF83 97 aa12.92□□□□□ -0.34
COL9A3-212ENST00000481800 SPP1P10451 314 aa12.92□□□□□ -0.34
COL9A3-212ENST00000481800 IL7P13232 177 aa12.92□□□□□ -0.34
COL9A3-212ENST00000481800 OR2F1Q13607 317 aa12.92□□□□□ -0.34
COL9A3-212ENST00000481800 CNPY1Q3B7I2 92 aa12.92□□□□□ -0.34
COL9A3-212ENST00000481800 TMEM41BQ5BJD5 291 aa12.92□□□□□ -0.34
COL9A3-212ENST00000481800 MORN3Q6PF18 240 aaPredicted RBP12.92□□□□□ -0.34
COL9A3-212ENST00000481800 TRPT1Q86TN4 253 aaKnown RBP12.92□□□□□ -0.34
COL9A3-212ENST00000481800 PPP1R14BQ96C90 147 aa12.92□□□□□ -0.34
COL9A3-212ENST00000481800 TRGV9Q99603 122 aa12.92□□□□□ -0.34
COL9A3-212ENST00000481800 STRAPQ9Y3F4 350 aaKnown RBP12.92□□□□□ -0.34
COL9A3-212ENST00000481800 ANXA7P20073 488 aaKnown RBP12.91□□□□□ -0.34
COL9A3-212ENST00000481800 RAB40CQ96S21 281 aa12.91□□□□□ -0.34
COL9A3-212ENST00000481800 DYNC2H1Q8NCM8 4307 aaKnown RBP12.91□□□□□ -0.34
COL9A3-212ENST00000481800 H3BP45 60 aa12.9□□□□□ -0.34
COL9A3-212ENST00000481800 CFDP00746 253 aaPredicted RBP12.9□□□□□ -0.34
COL9A3-212ENST00000481800 NKX2-1P43699 371 aaPredicted RBP12.9□□□□□ -0.34
COL9A3-212ENST00000481800 POLR2GP62487 172 aaKnown RBP eCLIP12.9□□□□□ -0.34
COL9A3-212ENST00000481800 ID3Q02535 119 aa12.9□□□□□ -0.34
COL9A3-212ENST00000481800 CEMP1Q6PRD7 247 aaPredicted RBP12.9□□□□□ -0.34
COL9A3-212ENST00000481800 THAP8Q8NA92 274 aa12.9□□□□□ -0.34
COL9A3-212ENST00000481800 SEPSECSQ9HD40 501 aaKnown RBP12.9□□□□□ -0.34
COL9A3-212ENST00000481800 FBXL17Q9UF56 701 aa12.9□□□□□ -0.34
COL9A3-212ENST00000481800 KLK5Q9Y337 293 aaPredicted RBP12.9□□□□□ -0.34
COL9A3-212ENST00000481800 STARD9Q9P2P6 4700 aa12.9□□□□□ -0.35
COL9A3-212ENST00000481800 BTCP35070 178 aa12.89□□□□□ -0.35
COL9A3-212ENST00000481800 AKR1C1Q04828 323 aa12.89□□□□□ -0.35
COL9A3-212ENST00000481800 C1orf194Q5T5A4 169 aa12.89□□□□□ -0.35
COL9A3-212ENST00000481800 PSENENQ9NZ42 101 aa12.89□□□□□ -0.35
COL9A3-212ENST00000481800 ID1P41134 155 aa12.88□□□□□ -0.35
COL9A3-212ENST00000481800 NUTF2P61970 127 aaKnown RBP12.88□□□□□ -0.35
COL9A3-212ENST00000481800 OR4D5Q8NGN0 318 aa12.88□□□□□ -0.35
COL9A3-212ENST00000481800 MFFQ9GZY8 342 aa12.88□□□□□ -0.35
COL9A3-212ENST00000481800 C11orf68Q9H3H3 251 aaKnown RBP12.88□□□□□ -0.35
COL9A3-212ENST00000481800 IGKV1OR2-108A0A075B7D4 117 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 SMCO3A2RU48 225 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 PRSS46E5RG02 174 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 LYRM1O43325 122 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 SSSCA1O60232 199 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 SCGB1D2O95969 90 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 IAH1Q2TAA2 248 aaPredicted RBP12.87□□□□□ -0.35
COL9A3-212ENST00000481800 ACOT7LQ6ZUV0 252 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 OR8I2Q8N0Y5 310 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 BPIFCQ8NFQ6 507 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 C11orf45Q8TAV5 145 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 RYR2Q92736 4967 aa12.87□□□□□ -0.35
COL9A3-212ENST00000481800 DEFB4AO15263 64 aa12.86□□□□□ -0.35
COL9A3-212ENST00000481800 PLA2G10O15496 165 aa12.86□□□□□ -0.35
COL9A3-212ENST00000481800 GIG44P09565 113 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-212ENST00000481800 S100A7P31151 101 aa12.86□□□□□ -0.35
COL9A3-212ENST00000481800 PHLDA1Q8WV24 401 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-212ENST00000481800 MITD1Q8WV92 249 aa12.86□□□□□ -0.35
COL9A3-212ENST00000481800 SMIM8Q96KF7 97 aa12.86□□□□□ -0.35
COL9A3-212ENST00000481800 LINC00052Q96N35 136 aa12.86□□□□□ -0.35
COL9A3-212ENST00000481800 C20orf85Q9H1P6 137 aa12.86□□□□□ -0.35
COL9A3-212ENST00000481800 GSKIPQ9P0R6 139 aa12.86□□□□□ -0.35
COL9A3-212ENST00000481800 CSMD3Q7Z407 3707 aa12.86□□□□□ -0.35
COL9A3-212ENST00000481800 SACSQ9NZJ4 4579 aa12.85□□□□□ -0.35
COL9A3-212ENST00000481800 ORM2P19652 201 aa12.85□□□□□ -0.35
COL9A3-212ENST00000481800 C4BPBP20851 252 aa12.85□□□□□ -0.35
COL9A3-212ENST00000481800 C1QTNF4Q9BXJ3 329 aa12.85□□□□□ -0.35
COL9A3-212ENST00000481800 CLEC5AQ9NY25 188 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms