RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CSPG4Q6UVK1 2322 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 CRYABP02511 175 aaKnown RBP11.11□□□□□ -0.63
USP42-206ENST00000479544 IL4P05112 153 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 EXOC3-AS1Q8N2X6 119 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 GCSAMQ8N6F7 178 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 OR4C13Q8NGP0 309 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 SLC25A33Q9BSK2 321 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 MRPL32Q9BYC8 188 aaKnown RBP11.11□□□□□ -0.63
USP42-206ENST00000479544 Q0VG73 95 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 GUSBP1Q15486 140 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 Q6ZPA2 131 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 Q6ZS49 121 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 MTURNQ8N3F0 131 aa11.11□□□□□ -0.63
USP42-206ENST00000479544 C9JCJ5 164 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 SYS1-DBNDD2H3BUS1 97 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 IGKV1-16P04430 117 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 SMIM13P0DJ93 91 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 CD69Q07108 199 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 SPANXN1Q5VSR9 72 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 DEFB104AQ8WTQ1 72 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 KBTBD11-OT1A0A1B0GTJ5 212 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 MGPP08493 103 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 SAMD13Q5VXD3 122 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 CD177Q8N6Q3 437 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 C19orf24Q9BVV8 132 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 PROK2Q9HC23 129 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 PPIAL4EA0A075B759 164 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 PPIAL4FP0DN26 164 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 VWC2Q2TAL6 325 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 FOXL2NBQ6ZUU3 175 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 PNKDQ8N490 385 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 FBXL15Q9H469 300 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 ZNF71Q9NQZ8 489 aaPredicted RBP11.1□□□□□ -0.63
USP42-206ENST00000479544 RALYQ9UKM9 306 aaKnown RBP11.1□□□□□ -0.63
USP42-206ENST00000479544 V9GYV3 84 aa11.1□□□□□ -0.63
USP42-206ENST00000479544 A0A1B0GWB2 263 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 GGTLC3B5MD39 225 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 COL8A2P25067 703 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 Q6ZT83 130 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 TP73-AS1Q9UF72 201 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 SPAARA0A1B0GVQ0 90 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 UPK2O00526 184 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 NCR2O95944 276 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 PSG9Q00887 426 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 SRSF7Q16629 238 aaKnown RBP eCLIP11.09□□□□□ -0.63
USP42-206ENST00000479544 ODF3L1Q8IXM7 274 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 RAB1CQ92928 201 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 ST20Q9HBF5 79 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 JKAMPQ9P055 326 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 TRAV30A0A087WSZ9 112 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 IQCF6A8MYZ5 107 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 WDR86Q86TI4 376 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 ZNF418Q8TF45 676 aaPredicted RBP11.09□□□□□ -0.63
USP42-206ENST00000479544 IGHV3-66A0A0C4DH42 116 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 MLNRO43193 412 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 FAM169BQ8N8A8 192 aa11.09□□□□□ -0.63
USP42-206ENST00000479544 NCOR2Q9Y618 2525 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 NRN1LQ496H8 165 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 TANC2Q9HCD6 1990 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 LOXL3P58215 753 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 HIST1H1AQ02539 215 aaPredicted RBP11.08□□□□□ -0.64
USP42-206ENST00000479544 GAGE1Q13065 139 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 SPACA3Q8IXA5 215 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 FOXC2Q99958 501 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 CHD7Q9P2D1 2997 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 IGHV2OR16-5A0A0B4J2B6 119 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 TRGV8A0A0C4DH27 118 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 KLK10O43240 276 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 COLCA1Q6ZS62 124 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 WDR31Q8NA23 367 aa11.08□□□□□ -0.64
USP42-206ENST00000479544 YPEL1O60688 119 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 PRSS57Q6UWY2 283 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 YPEL2Q96QA6 119 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 ANKHD1Q8IWZ3 2542 aaKnown RBP11.07□□□□□ -0.64
USP42-206ENST00000479544 NAV3Q8IVL0 2385 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 FAM27E3Q08E93 113 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 LCNL1Q6ZST4 164 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 TMEM8BA6NDV4 472 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 ETV2O00321 342 aaPredicted RBP11.07□□□□□ -0.64
USP42-206ENST00000479544 EVI2AP22794 236 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 YPEL4Q96NS1 127 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 MBNL3Q9NUK0 354 aaKnown RBP11.07□□□□□ -0.64
USP42-206ENST00000479544 PTPRSQ13332 1948 aa11.07□□□□□ -0.64
USP42-206ENST00000479544 FAM231BA6NCW3 169 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 FOXA2Q9Y261 457 aaPredicted RBP11.06□□□□□ -0.64
USP42-206ENST00000479544 MRPS16Q9Y3D3 137 aaKnown RBP11.06□□□□□ -0.64
USP42-206ENST00000479544 TRBV6-6A0A0A6YYG2 114 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 A0A0G2JLM5 398 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 SMIM17P0DL12 118 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 HTN1P15515 57 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 ECSCRQ19T08 205 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 CRIP3Q6Q6R5 217 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 PET117Q6UWS5 81 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 MAP1LC3AQ9H492 121 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 EML5Q05BV3 1969 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 ZNF106Q9H2Y7 1883 aaKnown RBP11.06□□□□□ -0.64
USP42-206ENST00000479544 GOSR1O95249 250 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 PRCDQ00LT1 54 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 FAM208BQ5VWN6 2430 aa11.06□□□□□ -0.64
USP42-206ENST00000479544 MYO9AB2RTY4 2548 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms