RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 RPL11P62913 178 aaKnown RBP10.31□□□□□ -0.76
UPF3A-204ENST00000475218 OR1S2Q8NGQ3 325 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 CXorf65A6NEN9 183 aa10.3□□□□□ -0.76
UPF3A-204ENST00000475218 DNASE2O00115 360 aaPredicted RBP10.3□□□□□ -0.76
UPF3A-204ENST00000475218 JTBO76095 146 aa10.3□□□□□ -0.76
UPF3A-204ENST00000475218 C16orf54Q6UWD8 224 aa10.3□□□□□ -0.76
UPF3A-204ENST00000475218 LGI3Q8N145 548 aa10.3□□□□□ -0.76
UPF3A-204ENST00000475218 HYLS1Q96M11 299 aa10.3□□□□□ -0.76
UPF3A-204ENST00000475218 SCGB3A2Q96PL1 93 aa10.3□□□□□ -0.76
UPF3A-204ENST00000475218 RABAC1Q9UI14 185 aa10.3□□□□□ -0.76
UPF3A-204ENST00000475218 IGKV1D-37A0A075B6S9 117 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 A0A1W2PS18 150 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 LYRM1O43325 122 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 RRAS2P62070 204 aaPredicted RBP10.29□□□□□ -0.76
UPF3A-204ENST00000475218 CEMP1Q6PRD7 247 aaPredicted RBP10.29□□□□□ -0.76
UPF3A-204ENST00000475218 TMED4Q7Z7H5 227 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 TRPT1Q86TN4 253 aaKnown RBP10.29□□□□□ -0.76
UPF3A-204ENST00000475218 STXBP6Q8NFX7 210 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 DTD1Q8TEA8 209 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 LINC00476Q8WZB0 136 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 ACY3Q96HD9 319 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 TMEM231Q9H6L2 316 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 CA1P00915 261 aaPredicted RBP10.29□□□□□ -0.76
UPF3A-204ENST00000475218 ZNF688P0C7X2 276 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 M6PRP20645 277 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 TOMM5Q8N4H5 51 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 Q8WTZ3 238 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 GATAD1Q8WUU5 269 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 GRAMD2BQ96HH9 432 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 U3KQ87 197 aa10.29□□□□□ -0.76
UPF3A-204ENST00000475218 KNCNA6PVL3 124 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 TOMM40O96008 361 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 IFNA10P01566 189 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 IL4P05112 153 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 PSG1P11464 419 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 C4BPBP20851 252 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 TMEM128Q5BJH2 165 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 LRTM2Q8N967 370 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 OR11H2Q8NH07 326 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 RARRES2Q99969 163 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 ALG5Q9Y673 324 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 VPS13DQ5THJ4 4388 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 KMT2AQ03164 3969 aa10.28□□□□□ -0.76
UPF3A-204ENST00000475218 BUB3O43684 328 aa10.27□□□□□ -0.77
UPF3A-204ENST00000475218 SRPXP78539 464 aa10.27□□□□□ -0.77
UPF3A-204ENST00000475218 PPP1R1AQ13522 171 aa10.27□□□□□ -0.77
UPF3A-204ENST00000475218 C7orf50Q9BRJ6 194 aaKnown RBP10.27□□□□□ -0.77
UPF3A-204ENST00000475218 CACFD1Q9UGQ2 172 aa10.27□□□□□ -0.77
UPF3A-204ENST00000475218 NUPR2A6NF83 97 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 INMT-MINDY4F8WBC2 141 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 DEFB4AO15263 64 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 RD3LP0DJH9 198 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 FAUP35544 74 aaKnown RBP10.26□□□□□ -0.77
UPF3A-204ENST00000475218 GAMTQ14353 236 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 ETFRF1Q6IPR1 90 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 OR51G1Q8NGK1 321 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 DEDD2Q8WXF8 326 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 C11orf68Q9H3H3 251 aaKnown RBP10.26□□□□□ -0.77
UPF3A-204ENST00000475218 IGKV1OR2-108A0A075B7D4 117 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 DUXBA0A1W2PPF3 345 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 SCGB2A1O75556 95 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 ANXA3P12429 323 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 AP3S2P59780 193 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 ZNF90Q03938 601 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 Q8NAQ8 132 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 OR1S1Q8NH92 325 aa10.26□□□□□ -0.77
UPF3A-204ENST00000475218 FRAS1Q86XX4 4008 aa10.25□□□□□ -0.77
UPF3A-204ENST00000475218 LINC00854A0A1B0GVQ3 168 aa10.25□□□□□ -0.77
UPF3A-204ENST00000475218 C7orf66A4D0T2 115 aa10.25□□□□□ -0.77
UPF3A-204ENST00000475218 PRSS46E5RG02 174 aa10.25□□□□□ -0.77
UPF3A-204ENST00000475218 SFT2D2O95562 160 aa10.25□□□□□ -0.77
UPF3A-204ENST00000475218 IAPPP10997 89 aa10.25□□□□□ -0.77
UPF3A-204ENST00000475218 VAMP1P23763 118 aa10.25□□□□□ -0.77
UPF3A-204ENST00000475218 NANOS2P60321 138 aaKnown RBP10.25□□□□□ -0.77
UPF3A-204ENST00000475218 STHQ8IWL8 128 aa10.25□□□□□ -0.77
UPF3A-204ENST00000475218 CSNK1G2-AS1Q8NCQ2 148 aa10.25□□□□□ -0.77
UPF3A-204ENST00000475218 PHLDA1Q8WV24 401 aaPredicted RBP10.25□□□□□ -0.77
UPF3A-204ENST00000475218 SLC25A21Q9BQT8 299 aaPredicted RBP10.25□□□□□ -0.77
UPF3A-204ENST00000475218 FAM90A26D6RGX4 464 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 IFNA4P05014 189 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 RBMY1A1P0DJD3 496 aaKnown RBP10.24□□□□□ -0.77
UPF3A-204ENST00000475218 RBMY1CP0DJD4 496 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 SLC25A6P12236 298 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 GPX4P36969 197 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-204ENST00000475218 AP2S1P53680 142 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-204ENST00000475218 DHRS2Q13268 280 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 RBMY1FQ15415 496 aaKnown RBP10.24□□□□□ -0.77
UPF3A-204ENST00000475218 GSG1LQ6UXU4 331 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 RNF125Q96EQ8 232 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 NARS2Q96I59 477 aaKnown RBP10.24□□□□□ -0.77
UPF3A-204ENST00000475218 RAB40CQ96S21 281 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 X6R8D5 127 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 HELTA6NFD8 242 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 Q5BKY6 102 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 PSMG4Q5JS54 123 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 ACTL10Q5JWF8 245 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 CCDC28AQ8IWP9 274 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 TMEM217Q8N7C4 229 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 MAGT1Q9H0U3 335 aa10.24□□□□□ -0.77
UPF3A-204ENST00000475218 BOLA1Q9Y3E2 137 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms