RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 KCNIP3Q9Y2W7 256 aa14.34□□□□□ -0.11
COL9A3-210ENST00000472880 FRAS1Q86XX4 4008 aa14.34□□□□□ -0.11
COL9A3-210ENST00000472880 IFNA10P01566 189 aa14.33□□□□□ -0.12
COL9A3-210ENST00000472880 SNRPD3P62318 126 aaKnown RBP14.33□□□□□ -0.12
COL9A3-210ENST00000472880 NPIPB3Q92617 1050 aa14.33□□□□□ -0.12
COL9A3-210ENST00000472880 RAB40CQ96S21 281 aa14.33□□□□□ -0.12
COL9A3-210ENST00000472880 TBC1D24Q9ULP9 559 aa14.33□□□□□ -0.12
COL9A3-210ENST00000472880 X6R8D5 127 aa14.33□□□□□ -0.12
COL9A3-210ENST00000472880 TOMM40O96008 361 aa14.32□□□□□ -0.12
COL9A3-210ENST00000472880 RD3LP0DJH9 198 aa14.32□□□□□ -0.12
COL9A3-210ENST00000472880 HLA-DMBP28068 263 aa14.32□□□□□ -0.12
COL9A3-210ENST00000472880 NMSQ5H8A3 153 aa14.32□□□□□ -0.12
COL9A3-210ENST00000472880 SIGLEC15Q6ZMC9 328 aa14.32□□□□□ -0.12
COL9A3-210ENST00000472880 NRN1Q9NPD7 142 aa14.32□□□□□ -0.12
COL9A3-210ENST00000472880 PRR13Q9NZ81 148 aa14.32□□□□□ -0.12
COL9A3-210ENST00000472880 AGRNO00468 2067 aa14.32□□□□□ -0.12
COL9A3-210ENST00000472880 FAM90A26D6RGX4 464 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 AKR1C4P17516 323 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 NUTF2P61970 127 aaKnown RBP14.31□□□□□ -0.12
COL9A3-210ENST00000472880 PRR20EP86478 221 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 PRR20CP86479 221 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 PRR20DP86480 221 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 PRR20BP86481 221 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 PRR20AP86496 221 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 Q6ZTC4 211 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 C1QTNF4Q9BXJ3 329 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 APLNQ9ULZ1 77 aa14.31□□□□□ -0.12
COL9A3-210ENST00000472880 TRAV10A0A0B4J240 114 aa14.3□□□□□ -0.12
COL9A3-210ENST00000472880 NUP62P37198 522 aaPredicted RBP14.3□□□□□ -0.12
COL9A3-210ENST00000472880 CCR6P51684 374 aa14.3□□□□□ -0.12
COL9A3-210ENST00000472880 SUPT4H1P63272 117 aaKnown RBP14.3□□□□□ -0.12
COL9A3-210ENST00000472880 SMCO1Q147U7 214 aa14.3□□□□□ -0.12
COL9A3-210ENST00000472880 BAK1Q16611 211 aa14.3□□□□□ -0.12
COL9A3-210ENST00000472880 DTD1Q8TEA8 209 aa14.3□□□□□ -0.12
COL9A3-210ENST00000472880 U3KQ87 197 aa14.3□□□□□ -0.12
COL9A3-210ENST00000472880 ELOA3CA0A087WX78 387 aaPredicted RBP14.29□□□□□ -0.12
COL9A3-210ENST00000472880 A0A0B4J2A0 478 aa14.29□□□□□ -0.12
COL9A3-210ENST00000472880 BUB3O43684 328 aa14.29□□□□□ -0.12
COL9A3-210ENST00000472880 PSG1P11464 419 aa14.29□□□□□ -0.12
COL9A3-210ENST00000472880 LGI3Q8N145 548 aa14.29□□□□□ -0.12
COL9A3-210ENST00000472880 CSNK1G2-AS1Q8NCQ2 148 aa14.29□□□□□ -0.12
COL9A3-210ENST00000472880 OR51G1Q8NGK1 321 aa14.29□□□□□ -0.12
COL9A3-210ENST00000472880 RNF125Q96EQ8 232 aa14.29□□□□□ -0.12
COL9A3-210ENST00000472880 SEPSECSQ9HD40 501 aaKnown RBP14.29□□□□□ -0.12
COL9A3-210ENST00000472880 HSPB7Q9UBY9 170 aa14.29□□□□□ -0.12
COL9A3-210ENST00000472880 SHPKQ9UHJ6 478 aa14.29□□□□□ -0.12
COL9A3-210ENST00000472880 ANXA3P12429 323 aa14.28□□□□□ -0.12
COL9A3-210ENST00000472880 SRPXP78539 464 aa14.28□□□□□ -0.12
COL9A3-210ENST00000472880 TRIQKQ629K1 86 aa14.28□□□□□ -0.12
COL9A3-210ENST00000472880 TMED4Q7Z7H5 227 aa14.28□□□□□ -0.12
COL9A3-210ENST00000472880 SDHCQ99643 169 aaPredicted RBP14.28□□□□□ -0.12
COL9A3-210ENST00000472880 SLC25A21Q9BQT8 299 aaPredicted RBP14.28□□□□□ -0.12
COL9A3-210ENST00000472880 PBDC1Q9BVG4 233 aa14.28□□□□□ -0.12
COL9A3-210ENST00000472880 RBKSQ9H477 322 aa14.28□□□□□ -0.12
COL9A3-210ENST00000472880 PFDN2Q9UHV9 154 aa14.28□□□□□ -0.12
COL9A3-210ENST00000472880 IGHV4-4A0A075B6R2 117 aa14.27□□□□□ -0.13
COL9A3-210ENST00000472880 INPP1P49441 399 aa14.27□□□□□ -0.13
COL9A3-210ENST00000472880 LYZL2Q7Z4W2 148 aa14.27□□□□□ -0.13
COL9A3-210ENST00000472880 XCL2Q9UBD3 114 aa14.27□□□□□ -0.13
COL9A3-210ENST00000472880 VPS13DQ5THJ4 4388 aa14.27□□□□□ -0.13
COL9A3-210ENST00000472880 DNAH10Q8IVF4 4471 aa14.26□□□□□ -0.13
COL9A3-210ENST00000472880 ZFP92A6NM28 416 aa14.26□□□□□ -0.13
COL9A3-210ENST00000472880 H3BMM0 161 aa14.26□□□□□ -0.13
COL9A3-210ENST00000472880 TMEM128Q5BJH2 165 aa14.26□□□□□ -0.13
COL9A3-210ENST00000472880 OR8G2PQ6IF36 304 aa14.26□□□□□ -0.13
COL9A3-210ENST00000472880 OR1S1Q8NH92 325 aa14.26□□□□□ -0.13
COL9A3-210ENST00000472880 SLC35E1Q96K37 410 aa14.26□□□□□ -0.13
COL9A3-210ENST00000472880 CELA1Q9UNI1 258 aa14.26□□□□□ -0.13
COL9A3-210ENST00000472880 PIGBOS1A0A0B4J2F0 54 aa14.25□□□□□ -0.13
COL9A3-210ENST00000472880 HLA-DRB4P13762 266 aa14.25□□□□□ -0.13
COL9A3-210ENST00000472880 NKX2-1P43699 371 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-210ENST00000472880 ATP5IP56385 69 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-210ENST00000472880 RNF126Q9BV68 326 aa14.25□□□□□ -0.13
COL9A3-210ENST00000472880 HLA-DRB4X5D2U9 266 aa14.25□□□□□ -0.13
COL9A3-210ENST00000472880 NAP1L6A6NFF2 107 aa14.24□□□□□ -0.13
COL9A3-210ENST00000472880 FABP1P07148 127 aa14.24□□□□□ -0.13
COL9A3-210ENST00000472880 GPX4P36969 197 aaPredicted RBP14.24□□□□□ -0.13
COL9A3-210ENST00000472880 DEFB131BA0A096LNP1 70 aa14.23□□□□□ -0.13
COL9A3-210ENST00000472880 AMBPP02760 352 aa14.23□□□□□ -0.13
COL9A3-210ENST00000472880 IL7P13232 177 aa14.23□□□□□ -0.13
COL9A3-210ENST00000472880 VAMP1P23763 118 aa14.23□□□□□ -0.13
COL9A3-210ENST00000472880 ID1P41134 155 aa14.23□□□□□ -0.13
COL9A3-210ENST00000472880 LYZP61626 148 aa14.23□□□□□ -0.13
COL9A3-210ENST00000472880 GAMTQ14353 236 aa14.23□□□□□ -0.13
COL9A3-210ENST00000472880 ZNF767PQ75MW2 155 aa14.23□□□□□ -0.13
COL9A3-210ENST00000472880 LINC00854A0A1B0GVQ3 168 aa14.22□□□□□ -0.13
COL9A3-210ENST00000472880 ZNF90Q03938 601 aa14.22□□□□□ -0.13
COL9A3-210ENST00000472880 C12orf74Q32Q52 190 aa14.22□□□□□ -0.13
COL9A3-210ENST00000472880 COQ8AQ8NI60 647 aa14.22□□□□□ -0.13
COL9A3-210ENST00000472880 PPP1R14BQ96C90 147 aa14.22□□□□□ -0.13
COL9A3-210ENST00000472880 LINC00052Q96N35 136 aa14.22□□□□□ -0.13
COL9A3-210ENST00000472880 IGKV1D-37A0A075B6S9 117 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 DUXBA0A1W2PPF3 345 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 NDUFB6O95139 128 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 SFT2D2O95562 160 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 IGKV3-20P01619 116 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 PSMB3P49720 205 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 RAB11AP62491 216 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 PPP1R1AQ13522 171 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 GDF5OSQ5U4N7 250 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms