RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 RD3LP0DJH9 198 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 SLC25A4P12235 298 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 FUSP35637 526 aaKnown RBP eCLIP12.77□□□□□ -0.37
SHH-205ENST00000472308 TSPAN5P62079 268 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 DLK1P80370 383 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 TTC32Q5I0X7 151 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 SPATA31B1PQ5VZV4 182 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 AMTNQ6UX39 209 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 OR51G1Q8NGK1 321 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 COQ8AQ8NI60 647 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 IGF2BP2-AS1Q96M15 143 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 CNBD2Q96M20 576 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 M0QYG6 137 aa12.76□□□□□ -0.37
SHH-205ENST00000472308 PSG1P11464 419 aa12.76□□□□□ -0.37
SHH-205ENST00000472308 ELK1P19419 428 aa12.76□□□□□ -0.37
SHH-205ENST00000472308 PI3P19957 117 aa12.76□□□□□ -0.37
SHH-205ENST00000472308 ID1P41134 155 aa12.76□□□□□ -0.37
SHH-205ENST00000472308 FCN2Q15485 313 aa12.76□□□□□ -0.37
SHH-205ENST00000472308 AARDQ4LEZ3 155 aa12.76□□□□□ -0.37
SHH-205ENST00000472308 TMEM69Q5SWH9 247 aa12.76□□□□□ -0.37
SHH-205ENST00000472308 NPIPB3Q92617 1050 aa12.76□□□□□ -0.37
SHH-205ENST00000472308 S100A16Q96FQ6 103 aaKnown RBP12.76□□□□□ -0.37
SHH-205ENST00000472308 HTR2BP41595 481 aa12.75□□□□□ -0.37
SHH-205ENST00000472308 RND3P61587 244 aa12.75□□□□□ -0.37
SHH-205ENST00000472308 C2orf83Q53S99 150 aa12.75□□□□□ -0.37
SHH-205ENST00000472308 SPARTQ8N0X7 666 aa12.75□□□□□ -0.37
SHH-205ENST00000472308 RNASEH2CQ8TDP1 164 aaKnown RBP12.75□□□□□ -0.37
SHH-205ENST00000472308 RNF125Q96EQ8 232 aa12.75□□□□□ -0.37
SHH-205ENST00000472308 C20orf173Q96LM9 149 aa12.75□□□□□ -0.37
SHH-205ENST00000472308 TMEM208Q9BTX3 173 aa12.75□□□□□ -0.37
SHH-205ENST00000472308 CRXO43186 299 aaPredicted RBP12.74□□□□□ -0.37
SHH-205ENST00000472308 ATP5G1P05496 136 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 PRSS3P35030 304 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 ATP5G3P48201 142 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 GABARAPL2P60520 117 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 CLINT1Q14677 625 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 UBE2NLQ5JXB2 153 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 EBLN2Q6P2I7 272 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 GPX8Q8TED1 209 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 ACY3Q96HD9 319 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 C18orf15Q96N68 181 aa12.74□□□□□ -0.37
SHH-205ENST00000472308 LOC100506127A0A0U1RQW1 187 aa12.73□□□□□ -0.37
SHH-205ENST00000472308 ISLRO14498 428 aa12.73□□□□□ -0.37
SHH-205ENST00000472308 AZU1P20160 251 aa12.73□□□□□ -0.37
SHH-205ENST00000472308 TSPOP30536 169 aa12.73□□□□□ -0.37
SHH-205ENST00000472308 SPCS3P61009 180 aa12.73□□□□□ -0.37
SHH-205ENST00000472308 Q6ZRN7 208 aaPredicted RBP12.73□□□□□ -0.37
SHH-205ENST00000472308 OR4C16Q8NGL9 310 aa12.73□□□□□ -0.37
SHH-205ENST00000472308 FRZBQ92765 325 aa12.73□□□□□ -0.37
SHH-205ENST00000472308 UHRF2Q96PU4 802 aa12.73□□□□□ -0.37
SHH-205ENST00000472308 DOK5Q9P104 306 aa12.73□□□□□ -0.37
SHH-205ENST00000472308 A0A1W2PPQ1 181 aa12.72□□□□□ -0.37
SHH-205ENST00000472308 NUP62P37198 522 aaPredicted RBP12.72□□□□□ -0.37
SHH-205ENST00000472308 PIGPP57054 158 aa12.72□□□□□ -0.37
SHH-205ENST00000472308 SP6Q3SY56 376 aa12.72□□□□□ -0.37
SHH-205ENST00000472308 SLC24A4Q8NFF2 622 aa12.72□□□□□ -0.37
SHH-205ENST00000472308 ABHD1Q96SE0 405 aa12.72□□□□□ -0.37
SHH-205ENST00000472308 UPK3BQ9BT76 320 aa12.72□□□□□ -0.37
SHH-205ENST00000472308 PBDC1Q9BVG4 233 aa12.72□□□□□ -0.37
SHH-205ENST00000472308 HEYLQ9NQ87 328 aaPredicted RBP12.72□□□□□ -0.37
SHH-205ENST00000472308 C3orf85A0A1B0GTC6 90 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 CBY3A6NI87 242 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 M0R2Z0 102 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 ATG12O94817 140 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 PGAM2P15259 253 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 TRIM16LQ309B1 348 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 OR8G2PQ6IF36 304 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 SAMD12Q8N8I0 201 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 OR52E5Q8NH55 327 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 FCGR1BQ92637 280 aa12.71□□□□□ -0.37
SHH-205ENST00000472308 TMEM127O75204 238 aa12.7□□□□□ -0.38
SHH-205ENST00000472308 INSP01308 110 aa12.7□□□□□ -0.38
SHH-205ENST00000472308 RCVRNP35243 200 aa12.7□□□□□ -0.38
SHH-205ENST00000472308 SUPT4H1P63272 117 aaKnown RBP12.7□□□□□ -0.38
SHH-205ENST00000472308 SPINK13Q1W4C9 94 aa12.7□□□□□ -0.38
SHH-205ENST00000472308 RRNAD1Q96FB5 475 aaKnown RBP12.7□□□□□ -0.38
SHH-205ENST00000472308 ZNF486Q96H40 463 aaPredicted RBP12.7□□□□□ -0.38
SHH-205ENST00000472308 C17orf77Q96MU5 243 aa12.7□□□□□ -0.38
SHH-205ENST00000472308 RPRMQ9NS64 109 aa12.7□□□□□ -0.38
SHH-205ENST00000472308 ZNF586Q9NXT0 402 aa12.7□□□□□ -0.38
SHH-205ENST00000472308 MDFICQ9P1T7 246 aa12.7□□□□□ -0.38
SHH-205ENST00000472308 UCP1P25874 307 aa12.69□□□□□ -0.38
SHH-205ENST00000472308 TGFBR1P36897 503 aa12.69□□□□□ -0.38
SHH-205ENST00000472308 LINC00315P59091 139 aa12.69□□□□□ -0.38
SHH-205ENST00000472308 C1orf194Q5T5A4 169 aa12.69□□□□□ -0.38
SHH-205ENST00000472308 ETFRF1Q6IPR1 90 aa12.69□□□□□ -0.38
SHH-205ENST00000472308 LHFPL1Q86WI0 220 aa12.69□□□□□ -0.38
SHH-205ENST00000472308 BAP18Q8IXM2 172 aa12.69□□□□□ -0.38
SHH-205ENST00000472308 OR11H7Q8NGC8 314 aa12.69□□□□□ -0.38
SHH-205ENST00000472308 PGPEP1Q9NXJ5 209 aa12.69□□□□□ -0.38
SHH-205ENST00000472308 IGKV1D-37A0A075B6S9 117 aa12.68□□□□□ -0.38
SHH-205ENST00000472308 KRTAP10-1P60331 282 aa12.68□□□□□ -0.38
SHH-205ENST00000472308 ZNF90Q03938 601 aa12.68□□□□□ -0.38
SHH-205ENST00000472308 ESRGQ1W209 222 aa12.68□□□□□ -0.38
SHH-205ENST00000472308 IZUMO2Q6UXV1 221 aa12.68□□□□□ -0.38
SHH-205ENST00000472308 RNASE11Q8TAA1 199 aaKnown RBP12.68□□□□□ -0.38
SHH-205ENST00000472308 CNN1P51911 297 aaKnown RBP12.67□□□□□ -0.38
SHH-205ENST00000472308 NMSQ5H8A3 153 aa12.67□□□□□ -0.38
SHH-205ENST00000472308 LHFPL5Q8TAF8 219 aa12.67□□□□□ -0.38
SHH-205ENST00000472308 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms