RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CASP6P55212 293 aa15.21■□□□□ 0.03
VIM-203ENST00000469543 PKIAP61925 76 aa15.21■□□□□ 0.03
VIM-203ENST00000469543 MSRB2Q9Y3D2 182 aa15.21■□□□□ 0.03
VIM-203ENST00000469543 CRYGCP07315 174 aa15.21■□□□□ 0.03
VIM-203ENST00000469543 TDRG1Q3Y452 100 aa15.21■□□□□ 0.03
VIM-203ENST00000469543 SSX8Q7RTT4 187 aa15.21■□□□□ 0.03
VIM-203ENST00000469543 BAGE2Q86Y30 109 aa15.21■□□□□ 0.03
VIM-203ENST00000469543 CX3CL1P78423 397 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 SSX2Q16385 188 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 SRSF12Q8WXF0 261 aaKnown RBP15.2■□□□□ 0.02
VIM-203ENST00000469543 ASCL2Q99929 193 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 SPG11Q96JI7 2443 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 PGPA6NDG6 321 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 NDUFS7O75251 213 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 OR1L4Q8NGR5 311 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 MS4A10Q96PG2 267 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 ARL2-SNX15V9GYD0 113 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 TSTD3H0UI37 97 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 BPIFB3P59826 476 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 CMTM2Q8TAZ6 248 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 CDC42EP3Q9UKI2 254 aa15.2■□□□□ 0.02
VIM-203ENST00000469543 PEX7O00628 323 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 PSG1P11464 419 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 BAGE3Q86Y29 109 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 OSTCQ9NRP0 149 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 CNIH1O95406 144 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 MMDQ15546 238 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 TMEM116Q8NCL8 245 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 RCHY1Q96PM5 261 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 WNT10AQ9GZT5 417 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 GNB4Q9HAV0 340 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 RNF114Q9Y508 228 aa15.19■□□□□ 0.02
VIM-203ENST00000469543 UTP20O75691 2785 aaKnown RBP15.18■□□□□ 0.02
VIM-203ENST00000469543 CFAP46Q8IYW2 2715 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 A0A1W2PPR1 153 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 NBEAP1P0C6P0 100 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 SELENOTP62341 195 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 LINC00322Q6ZN03 302 aaPredicted RBP15.18■□□□□ 0.02
VIM-203ENST00000469543 Q6ZWC4 215 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 RBP4P02753 201 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 SLC25A5P05141 298 aaKnown RBP15.18■□□□□ 0.02
VIM-203ENST00000469543 LYZP61626 148 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 TMEM136Q6ZRR5 245 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 NUDT10Q8NFP7 164 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 OR8B3Q8NGG8 313 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 NUDT11Q96G61 164 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 OR8B2Q96RD0 313 aa15.18■□□□□ 0.02
VIM-203ENST00000469543 F11RQ9Y624 299 aaKnown RBP15.18■□□□□ 0.02
VIM-203ENST00000469543 TRAV8-1A0A0A6YYK1 113 aa15.17■□□□□ 0.02
VIM-203ENST00000469543 A8MWP6 167 aa15.17■□□□□ 0.02
VIM-203ENST00000469543 LY6LH3BQJ8 138 aa15.17■□□□□ 0.02
VIM-203ENST00000469543 BCL6BQ8N143 479 aaPredicted RBP15.17■□□□□ 0.02
VIM-203ENST00000469543 BEND2Q8NDZ0 799 aa15.17■□□□□ 0.02
VIM-203ENST00000469543 CHODLQ9H9P2 273 aa15.17■□□□□ 0.02
VIM-203ENST00000469543 VWC2LB2RUY7 222 aa15.17■□□□□ 0.02
VIM-203ENST00000469543 CDKN1AP38936 164 aa15.17■□□□□ 0.02
VIM-203ENST00000469543 MYCNOSP40205 109 aa15.17■□□□□ 0.02
VIM-203ENST00000469543 FLNCQ14315 2725 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 A6NNC1 897 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 HYPMO75409 117 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 TNFRSF14Q92956 283 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 SMIM27A0A1W2PRY6 76 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 SLAQ13239 276 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 LY6DQ14210 128 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 RNF2Q99496 336 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 HSPB9Q9BQS6 159 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 EPDR1Q9UM22 224 aa15.16■□□□□ 0.02
VIM-203ENST00000469543 LIPFP07098 398 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 HES1Q14469 280 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 EXOC3-AS1Q8N2X6 119 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 PERPQ96FX8 193 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 C17orf77Q96MU5 243 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 SSBP4Q9BWG4 385 aaPredicted RBP15.15■□□□□ 0.02
VIM-203ENST00000469543 GNB1LQ9BYB4 327 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 IGLC1P0CG04 106 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 GDF5OSQ5U4N7 250 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 ETFRF1Q6IPR1 90 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 TRGV9Q99603 122 aa15.15■□□□□ 0.02
VIM-203ENST00000469543 FBXL19-AS1Q494R0 122 aa15.14■□□□□ 0.01
VIM-203ENST00000469543 PVRIGQ6DKI7 326 aa15.14■□□□□ 0.01
VIM-203ENST00000469543 ZNF600Q6ZNG1 722 aa15.14■□□□□ 0.01
VIM-203ENST00000469543 DYNAPQ8N1N2 210 aa15.14■□□□□ 0.01
VIM-203ENST00000469543 I3L2K1 104 aa15.14■□□□□ 0.01
VIM-203ENST00000469543 GP9P14770 177 aa15.14■□□□□ 0.01
VIM-203ENST00000469543 SRIP30626 198 aa15.14■□□□□ 0.01
VIM-203ENST00000469543 GPR6P46095 362 aaPredicted RBP15.14■□□□□ 0.01
VIM-203ENST00000469543 POLR3KQ9Y2Y1 108 aaPredicted RBP15.14■□□□□ 0.01
VIM-203ENST00000469543 BMPR1BO00238 502 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 HTR1DP28221 377 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 CAMPP49913 170 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 KLRB1Q12918 225 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 NUP35Q8NFH5 326 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 ZNF705FA8MVS1 300 aaPredicted RBP15.13■□□□□ 0.01
VIM-203ENST00000469543 IGKV1-17P01599 117 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 ZNF705DP0CH99 300 aaPredicted RBP15.13■□□□□ 0.01
VIM-203ENST00000469543 ZNF705BP0CI00 300 aaPredicted RBP15.13■□□□□ 0.01
VIM-203ENST00000469543 TAS2R60P59551 318 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 UBE2G1P62253 170 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 DNLZQ5SXM8 178 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 TPTE2P1Q5T6R2 138 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms