RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 S100A7AQ86SG5 101 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 ABHD5Q8WTS1 349 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 RAB24Q969Q5 203 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 FANCD2OSQ96PS1 177 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 MAP1LC3BQ9GZQ8 125 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 MANBALQ9NQG1 85 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 RFNGQ9Y644 331 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 TGP01266 2768 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 IGKV1D-37A0A075B6S9 117 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 TRBV9A0A0B4J1U6 114 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 PSMB11A5LHX3 300 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 K7EIM0 57 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 CLN5O75503 358 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 CXorf1O96002 111 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 OR5G3P0C626 314 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 OR10J1P30954 320 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 TAS2R45P59539 299 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 YPEL3P61236 119 aaPredicted RBP9.21□□□□□ -0.94
USP54-209ENST00000464635 C19orf54Q5BKX5 351 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 MIC13Q5XKP0 118 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 PQLC2Q6ZP29 291 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 BPIFCQ8NFQ6 507 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 NPIPB3Q92617 1050 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 SLC35B3Q9H1N7 401 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 DNAJC4Q9NNZ3 241 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 RNF24Q9Y225 148 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 DMRT1Q9Y5R6 373 aa9.21□□□□□ -0.94
USP54-209ENST00000464635 AMY1AP04745 511 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 S100A7P31151 101 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 MFAP4P55083 255 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 ELLP55199 621 aaPredicted RBP9.2□□□□□ -0.94
USP54-209ENST00000464635 MLANAQ16655 118 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 FBLN7Q53RD9 439 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 FAM209BQ5JX69 171 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 C11orf44Q8N8P7 122 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 STXBP6Q8NFX7 210 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 OR2T6Q8NHC8 308 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 MISP3Q96FF7 219 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 EIF5A2Q9GZV4 153 aaKnown RBP9.2□□□□□ -0.94
USP54-209ENST00000464635 VAX2Q9UIW0 290 aa9.2□□□□□ -0.94
USP54-209ENST00000464635 LOC102723971A0A1B0GUV8 181 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 ZFP92A6NM28 416 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 TMEM250H0YL14 139 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 REG1AP05451 166 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 IGLC1P0CG04 106 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 BCL2P10415 239 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 RND2P52198 227 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 CCL20P78556 96 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 NDPQ00604 133 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 C1QL4Q86Z23 238 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 CCDC28AQ8IWP9 274 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 KLHDC1Q8N7A1 406 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 NECAP1Q8NC96 275 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 ACY3Q96HD9 319 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 TREM1Q9NP99 234 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 FUT9Q9Y231 359 aa9.19□□□□□ -0.94
USP54-209ENST00000464635 FAM122CQ6P4D5 195 aa9.18□□□□□ -0.94
USP54-209ENST00000464635 LCN15Q6UWW0 184 aa9.18□□□□□ -0.94
USP54-209ENST00000464635 TMEM219Q86XT9 240 aa9.18□□□□□ -0.94
USP54-209ENST00000464635 SVBPQ8N300 66 aa9.18□□□□□ -0.94
USP54-209ENST00000464635 LINC00052Q96N35 136 aa9.18□□□□□ -0.94
USP54-209ENST00000464635 HSPB9Q9BQS6 159 aa9.18□□□□□ -0.94
USP54-209ENST00000464635 NKX6-2Q9C056 277 aaPredicted RBP9.18□□□□□ -0.94
USP54-209ENST00000464635 ZNF702PQ9H963 129 aa9.18□□□□□ -0.94
USP54-209ENST00000464635 TMEM167BQ9NRX6 74 aa9.18□□□□□ -0.94
USP54-209ENST00000464635 TECRQ9NZ01 308 aaKnown RBP9.18□□□□□ -0.94
USP54-209ENST00000464635 PRKDCP78527 4128 aaKnown RBP9.18□□□□□ -0.94
USP54-209ENST00000464635 TRBV7-1A0A0A6YYK4 115 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 FAM223BA6NKX1 122 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 AP4M1O00189 453 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 ATP6V0E1O15342 81 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 OR2C1O95371 312 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 TOMM40O96008 361 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 C8orf88P0DMB2 117 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 SRSF3P84103 164 aaKnown RBP9.17□□□□□ -0.94
USP54-209ENST00000464635 FAM74A3Q4VXF1 159 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 FAM78BQ5VT40 261 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 UNQ5815/PRO19632Q6UWF5 114 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 SSX7Q7RTT5 188 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 FAM223AQ8IWN6 122 aa9.17□□□□□ -0.94
USP54-209ENST00000464635 TRAV41A0A0B4J266 112 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 F8W036 122 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 PDE6DO43924 150 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 SNAPINO95295 136 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 IGKV1-17P01599 117 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 SRP19P09132 144 aaKnown RBP9.16□□□□□ -0.94
USP54-209ENST00000464635 SFTA3P0C7M3 94 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 PPIFP30405 207 aaKnown RBP9.16□□□□□ -0.94
USP54-209ENST00000464635 MEF2BQ02080 365 aaPredicted RBP9.16□□□□□ -0.94
USP54-209ENST00000464635 ICAM4Q14773 271 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 Q6ZS46 218 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 TMEM37Q8WXS4 190 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 USMG5Q96IX5 58 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 TCEAL7Q9BRU2 100 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 FAM103A1Q9BTL3 118 aaKnown RBP9.16□□□□□ -0.94
USP54-209ENST00000464635 NPFFR1Q9GZQ6 430 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 SLC25A22Q9H936 323 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 SEPSECSQ9HD40 501 aaKnown RBP9.16□□□□□ -0.94
USP54-209ENST00000464635 SERTAD4Q9NUC0 356 aa9.16□□□□□ -0.94
USP54-209ENST00000464635 C21orf62Q9NYP8 219 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms