RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 BUB3O43684 328 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 NUPR1O60356 82 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 HLA-DRB1P01911 266 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 BCL2P10415 239 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 VDAC1P21796 283 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 INSL3P51460 131 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 DYNLT1P63172 113 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 VAX1Q5SQQ9 334 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF793Q6ZN11 406 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 ZCCHC23Q6ZST2 131 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 SH2D6Q7Z4S9 175 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF101Q8IZC7 436 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 TMEM256Q8N2U0 113 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF441Q8N8Z8 693 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 C18orf32Q8TCD1 76 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 LINC00476Q8WZB0 136 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 EEF1AKMT3Q96AZ1 226 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF501Q96CX3 271 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 LINC00526Q96FQ7 95 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 EIF5A2Q9GZV4 153 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 DEPPQ9NTK1 212 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 SELENOKQ9Y6D0 94 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 CHCHD2Q9Y6H1 151 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 TRAV9-2A0A087WT02 112 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 A0A1B0GV50 99 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 GRIFINA4D1Z8 144 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 C5orf49A4QMS7 147 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 GABARAPH6UMI1 98 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 UQCRQO14949 82 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 CSRP3P50461 194 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 PCSK4Q6UW60 755 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 Q6ZS92 163 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 Q6ZSV7 163 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 NEXN-AS1Q8NBZ9 246 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 PRELID3AQ96N28 172 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 TBL1YQ9BQ87 522 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 TMEM70Q9BUB7 260 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 SPANXDQ9BXN6 97 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 CYTL1Q9NRR1 136 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 RPUSD1Q9UJJ7 312 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF835Q9Y2P0 537 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 KALRNO60229 2985 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 LOC107986453A0A1B0GWG9 222 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 DPRXA6NFQ7 191 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 SNCGO76070 127 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 SLC2A10O95528 541 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 OR9G9P0C7N8 305 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 CTLA4P16410 223 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 ATP5G3P48201 142 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 LOXL1Q08397 574 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 IL15RAQ13261 267 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 KLF9Q13886 244 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF726P1Q15940 193 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 C12orf74Q32Q52 190 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF506Q5JVG8 444 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 LEG1Q6P5S2 330 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 AMTNQ6UX39 209 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 TCF23Q7RTU1 214 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 SPATA12Q7Z6I5 190 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 TMEM99Q8N816 258 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 LRTM2Q8N967 370 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF114Q8NC26 417 aa3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 SLC25A44Q96H78 314 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-209ENST00000456975 A0A1B0GWB2 263 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF253O75346 499 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF737O75373 536 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 NCR2O95944 276 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 ELK1P19419 428 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 GATA2P23769 480 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 RBMXP38159 391 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 PPICP45877 212 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 PSMB3P49720 205 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 TMEM258P61165 79 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 RPS21P63220 83 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 PRDX1Q06830 199 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 DAZ2Q13117 558 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 ODF3L2Q3SX64 289 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 GAGE2AQ6NT46 116 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 Q6ZRU5 148 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 Q75L30 129 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 DAZ4Q86SG3 579 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 LINC00311Q8N616 119 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 OR52P1PQ8NH57 321 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 FGFBP3Q8TAT2 258 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 C18orf15Q96N68 181 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 APOOQ9BUR5 198 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 COMMD5Q9GZQ3 224 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 KLK15Q9H2R5 256 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 PLEKHF2Q9H8W4 249 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 DAZ1Q9NQZ3 744 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 DAZ3Q9NR90 486 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 OTORQ9NRC9 128 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 NUDT4Q9NZJ9 180 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 PLXNA2O75051 1894 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 TRDV1A0A1B0GX56 115 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 PITX3O75364 302 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 ARL6IP5O75915 188 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 APOMO95445 188 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 NGFP01138 241 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 IGKV1D-16P01601 117 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms