RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PARD6GQ9BYG4 376 aaPredicted RBP12.07□□□□□ -0.48
USP40-206ENST00000443711 WDR61Q9GZS3 305 aaKnown RBP12.07□□□□□ -0.48
USP40-206ENST00000443711 PEMTQ9UBM1 199 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 UFC1Q9Y3C8 167 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 BORCS7-ASMTA0A0B4J1R7 106 aa12.06□□□□□ -0.48
USP40-206ENST00000443711 CXCL2P19875 107 aa12.06□□□□□ -0.48
USP40-206ENST00000443711 ELLP55199 621 aaPredicted RBP12.06□□□□□ -0.48
USP40-206ENST00000443711 RCC1LQ96I51 464 aaKnown RBP12.06□□□□□ -0.48
USP40-206ENST00000443711 ZNF414Q96IQ9 312 aa12.06□□□□□ -0.48
USP40-206ENST00000443711 MGST2Q99735 147 aa12.06□□□□□ -0.48
USP40-206ENST00000443711 GINS3Q9BRX5 216 aa12.06□□□□□ -0.48
USP40-206ENST00000443711 C20orf24Q9BUV8 137 aa12.06□□□□□ -0.48
USP40-206ENST00000443711 SLC45A2Q9UMX9 530 aa12.06□□□□□ -0.48
USP40-206ENST00000443711 WI2-2373I1.2A0A1W2PRP0 233 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 K7EMT4 169 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 CD33P20138 364 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 UNQ9165/PRO28630Q6UXU0 137 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 ZNF709Q8N972 641 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 WFDC9Q8NEX5 89 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 OR9G4Q8NGQ1 327 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 ELOVL1Q9BW60 279 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 GGTLC1Q9BX51 225 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 ZFAND3Q9H8U3 227 aa12.05□□□□□ -0.48
USP40-206ENST00000443711 IGHV3OR16-8A0A075B7F1 116 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 KANTRA0A1W2PQU2 76 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 A8MWP6 167 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 C17orf112F2Z3M2 114 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 IL4P05112 153 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 GATA2P23769 480 aaPredicted RBP12.04□□□□□ -0.48
USP40-206ENST00000443711 LGALSLQ3ZCW2 172 aaPredicted RBP12.04□□□□□ -0.48
USP40-206ENST00000443711 TMEM182Q6ZP80 229 aaPredicted RBP12.04□□□□□ -0.48
USP40-206ENST00000443711 TMUB2Q71RG4 321 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 ARPC5LQ9BPX5 153 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 NPCDR1Q9BY65 106 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 ARL6Q9H0F7 186 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 DAZ1Q9NQZ3 744 aaKnown RBP12.04□□□□□ -0.48
USP40-206ENST00000443711 KCNIP2Q9NS61 270 aa12.04□□□□□ -0.48
USP40-206ENST00000443711 JTBO76095 146 aa12.03□□□□□ -0.48
USP40-206ENST00000443711 RPL29P47914 159 aaKnown RBP12.03□□□□□ -0.48
USP40-206ENST00000443711 LYZP61626 148 aa12.03□□□□□ -0.48
USP40-206ENST00000443711 OPCMLQ14982 345 aa12.03□□□□□ -0.48
USP40-206ENST00000443711 TM4SF20Q53R12 229 aa12.03□□□□□ -0.48
USP40-206ENST00000443711 RPL7L1Q6DKI1 246 aaKnown RBP12.03□□□□□ -0.48
USP40-206ENST00000443711 RNF125Q96EQ8 232 aa12.03□□□□□ -0.48
USP40-206ENST00000443711 MCRIP2Q9BUT9 160 aaKnown RBP12.03□□□□□ -0.48
USP40-206ENST00000443711 C2orf70A6NJV1 201 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 BCL2L11O43521 198 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 ZNF207O43670 478 aaKnown RBP12.02□□□□□ -0.49
USP40-206ENST00000443711 LINC00869P0C866 280 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 NPPCP23582 126 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 PRR20EP86478 221 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 PRR20CP86479 221 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 PRR20DP86480 221 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 PRR20BP86481 221 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 PRR20AP86496 221 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 PXDC1Q5TGL8 231 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 MIC13Q5XKP0 118 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 Q6ZRG5 221 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 STPG3Q8N7X2 389 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 MARC2Q969Z3 335 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 METTL26Q96S19 204 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 PBDC1Q9BVG4 233 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 CYTL1Q9NRR1 136 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 VWFP04275 2813 aa12.02□□□□□ -0.49
USP40-206ENST00000443711 TMEM213A2RRL7 107 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 CSN3P07498 182 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 CBLN1P23435 193 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 PLP1P60201 277 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 USF2Q15853 346 aaPredicted RBP12.01□□□□□ -0.49
USP40-206ENST00000443711 PRR31Q5SQ13 230 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 IL34Q6ZMJ4 242 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 HSD17B11Q8NBQ5 300 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 NARS2Q96I59 477 aaKnown RBP12.01□□□□□ -0.49
USP40-206ENST00000443711 SLC39A9Q9NUM3 307 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 MRPL27Q9P0M9 148 aaKnown RBP12.01□□□□□ -0.49
USP40-206ENST00000443711 PFDN2Q9UHV9 154 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 RABAC1Q9UI14 185 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 TIMM9Q9Y5J7 89 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 PXMP4Q9Y6I8 212 aa12.01□□□□□ -0.49
USP40-206ENST00000443711 IGHV7-4-1A0A0J9YVY3 117 aa12□□□□□ -0.49
USP40-206ENST00000443711 SEC14L6B5MCN3 397 aa12□□□□□ -0.49
USP40-206ENST00000443711 HYPMO75409 117 aa12□□□□□ -0.49
USP40-206ENST00000443711 HNRNPCP07910 306 aaKnown RBP eCLIP12□□□□□ -0.49
USP40-206ENST00000443711 C8orf88P0DMB2 117 aa12□□□□□ -0.49
USP40-206ENST00000443711 FOLR2P14207 255 aa12□□□□□ -0.49
USP40-206ENST00000443711 ORM2P19652 201 aa12□□□□□ -0.49
USP40-206ENST00000443711 C4BPBP20851 252 aa12□□□□□ -0.49
USP40-206ENST00000443711 CRYBB3P26998 211 aa12□□□□□ -0.49
USP40-206ENST00000443711 S100A7P31151 101 aa12□□□□□ -0.49
USP40-206ENST00000443711 BMI1P35226 326 aa12□□□□□ -0.49
USP40-206ENST00000443711 B2MP61769 119 aa12□□□□□ -0.49
USP40-206ENST00000443711 EIF5AP63241 154 aaKnown RBP12□□□□□ -0.49
USP40-206ENST00000443711 S100A7AQ86SG5 101 aa12□□□□□ -0.49
USP40-206ENST00000443711 C9orf62Q8N4C0 152 aa12□□□□□ -0.49
USP40-206ENST00000443711 OR1B1Q8NGR6 318 aa12□□□□□ -0.49
USP40-206ENST00000443711 GNPNAT1Q96EK6 184 aaPredicted RBP12□□□□□ -0.49
USP40-206ENST00000443711 RSG1Q9BU20 258 aa12□□□□□ -0.49
USP40-206ENST00000443711 ZNF471Q9BX82 626 aaPredicted RBP12□□□□□ -0.49
USP40-206ENST00000443711 SIGLEC8Q9NYZ4 499 aa12□□□□□ -0.49
USP40-206ENST00000443711 SMPXQ9UHP9 88 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms