RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 LYRM4Q9HD34 91 aa2.99□□□□□ -1.93
HMGB3-203ENST00000430118 TMEM106BQ9NUM4 274 aa2.99□□□□□ -1.93
HMGB3-203ENST00000430118 MTCH1Q9NZJ7 389 aa2.99□□□□□ -1.93
HMGB3-203ENST00000430118 MRM2Q9UI43 246 aaKnown RBP2.99□□□□□ -1.93
HMGB3-203ENST00000430118 TRAPPC2LQ9UL33 140 aa2.99□□□□□ -1.93
HMGB3-203ENST00000430118 PSG8Q9UQ74 426 aa2.99□□□□□ -1.93
HMGB3-203ENST00000430118 CHCHD2Q9Y6H1 151 aaPredicted RBP2.99□□□□□ -1.93
HMGB3-203ENST00000430118 PKD1L1Q8TDX9 2849 aa2.99□□□□□ -1.93
HMGB3-203ENST00000430118 TGP01266 2768 aa2.99□□□□□ -1.93
HMGB3-203ENST00000430118 CR1P17927 2039 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 MGAM2Q2M2H8 2515 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 SNRNP200O75643 2136 aaKnown RBP2.98□□□□□ -1.93
HMGB3-203ENST00000430118 A0A096LNT2 108 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 OR51F1A6NGY5 319 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 XKRYO14609 159 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 PIN1P1O15428 100 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 SNAI2O43623 268 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 CDS2O95674 445 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 REG1AP05451 166 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 MMP7P09237 267 aaPredicted RBP2.98□□□□□ -1.93
HMGB3-203ENST00000430118 SEC11BP0C7V7 166 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 IGLC1P0CG04 106 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 OR12D1P0DN82 309 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 AZU1P20160 251 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 LOXP28300 417 aaPredicted RBP2.98□□□□□ -1.93
HMGB3-203ENST00000430118 PPICP45877 212 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 EFNA4P52798 201 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 OR12D2P58182 307 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 TAS2R41P59536 307 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 TAS2R20P59543 309 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 S100A10P60903 97 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 BTN3A2P78410 334 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 HSD52Q0P140 79 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 ENDOGQ14249 297 aaKnown RBP2.98□□□□□ -1.93
HMGB3-203ENST00000430118 GINS1Q14691 196 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 BATFQ16520 125 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 MRPL23Q16540 153 aaKnown RBP2.98□□□□□ -1.93
HMGB3-203ENST00000430118 HIST3H3Q16695 136 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 IAH1Q2TAA2 248 aaPredicted RBP2.98□□□□□ -1.93
HMGB3-203ENST00000430118 ZNF791Q3KP31 576 aaPredicted RBP2.98□□□□□ -1.93
HMGB3-203ENST00000430118 ACSM3Q53FZ2 586 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 ACTL10Q5JWF8 245 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 CASC10Q5T4H9 136 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 FAM78BQ5VT40 261 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 C19orf35Q6ZS72 473 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 FA2HQ7L5A8 372 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 OLIG3Q7RTU3 272 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 MSRB3Q8IXL7 192 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 C1orf174Q8IYL3 243 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 C6orf223Q8N319 242 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 LINC00471Q8N535 108 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 DEFB125Q8N687 156 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 TMEM252Q8N6L7 170 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 TCTEX1D1Q8N7M0 179 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 ZFP41Q8N8Y5 198 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 C5orf17Q8NAS9 161 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 SUMF2Q8NBJ7 301 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 OR4D11Q8NGI4 311 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 OR1N2Q8NGR9 330 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 OR52E5Q8NH55 327 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 MRAPQ8TCY5 172 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 PPP1R1CQ8WVI7 109 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 DCUN1D4Q92564 292 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 TVP23CQ96ET8 276 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 SLC25A22Q9H936 323 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 SPANXCQ9NY87 97 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 SLC25A37Q9NYZ2 338 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 DNAJC27Q9NZQ0 273 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 ERG28Q9UKR5 140 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 FIS1Q9Y3D6 152 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 DNAJC13O75165 2243 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 USF3Q68DE3 2245 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 NOTCH1P46531 2555 aa2.98□□□□□ -1.93
HMGB3-203ENST00000430118 ZNF407Q9C0G0 2248 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 ABCA1O95477 2261 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.97□□□□□ -1.93
HMGB3-203ENST00000430118 A0A1W2PRD5 423 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 MAP1LC3B2A6NCE7 125 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 ZNF705FA8MVS1 300 aaPredicted RBP2.97□□□□□ -1.93
HMGB3-203ENST00000430118 H3BQ15 152 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 GEMIN2O14893 280 aaKnown RBP2.97□□□□□ -1.93
HMGB3-203ENST00000430118 ERI3O43414 337 aaKnown RBP2.97□□□□□ -1.93
HMGB3-203ENST00000430118 HYPMO75409 117 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 ARL6IP5O75915 188 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 HAND1O96004 215 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 HLA-DRB1P01911 266 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 TACSTD2P09758 323 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 ZNF705DP0CH99 300 aaPredicted RBP2.97□□□□□ -1.93
HMGB3-203ENST00000430118 ZNF705BP0CI00 300 aaPredicted RBP2.97□□□□□ -1.93
HMGB3-203ENST00000430118 LIMS3P0CW19 117 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 LIMS4P0CW20 117 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 AKAIN1P0CW23 69 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 PGA4P0DJD7 388 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 PGA5P0DJD9 388 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 ZNF708P17019 499 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 CD34P28906 385 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 P2RX1P51575 399 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 CAV3P56539 151 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 TPPP2P59282 170 aa2.97□□□□□ -1.93
HMGB3-203ENST00000430118 TAS2R30P59541 319 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms