RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 OR10G8Q8NGN5 311 aa6.66□□□□□ -1.34
USP54-203ENST00000418501 Q96MF0 132 aa6.66□□□□□ -1.34
USP54-203ENST00000418501 TMPRSS5Q9H3S3 457 aa6.66□□□□□ -1.34
USP54-203ENST00000418501 A0A0U1RQK1 487 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 IGLC1P0CG04 106 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 PSG1P11464 419 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 PDE6HQ13956 83 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 FAM106AQ4KMX7 169 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 C5orf56Q8N8D9 126 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 IMMP2LQ96T52 175 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 FAM103A1Q9BTL3 118 aaKnown RBP6.65□□□□□ -1.34
USP54-203ENST00000418501 FNDC4Q9H6D8 234 aaPredicted RBP6.65□□□□□ -1.34
USP54-203ENST00000418501 SEPSECSQ9HD40 501 aaKnown RBP6.65□□□□□ -1.34
USP54-203ENST00000418501 IGHV3-21A0A0B4J1V1 117 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 UBE2CO00762 179 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 FOLR2P14207 255 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 NPPCP23582 126 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 DLX1P56177 255 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 TPPP2P59282 170 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 TMEM86BQ8N661 226 aa6.65□□□□□ -1.34
USP54-203ENST00000418501 PF4V1P10720 104 aa6.65□□□□□ -1.35
USP54-203ENST00000418501 RPS10P46783 165 aaKnown RBP6.65□□□□□ -1.35
USP54-203ENST00000418501 RUSC1-AS1Q66K80 236 aa6.65□□□□□ -1.35
USP54-203ENST00000418501 BRD3OSQ6XYD6 125 aa6.65□□□□□ -1.35
USP54-203ENST00000418501 ARL6IP6Q8N6S5 226 aa6.65□□□□□ -1.35
USP54-203ENST00000418501 FMC1Q96HJ9 113 aa6.65□□□□□ -1.35
USP54-203ENST00000418501 SHANK2-AS3Q9BTD1 123 aa6.65□□□□□ -1.35
USP54-203ENST00000418501 C5orf52A6NGY3 159 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 ATP6V0E1O15342 81 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 MGST1P10620 155 aaKnown RBP6.64□□□□□ -1.35
USP54-203ENST00000418501 GCSAMLQ5JQS6 135 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 C11orf52Q96A22 123 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 ZNF580Q9UK33 172 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 A6NDX4 124 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 S100A8P05109 93 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 ERVFC1-1P60608 527 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 C15orf32Q32M92 178 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 C1orf194Q5T5A4 169 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 BLNKQ8WV28 456 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 SLC50A1Q9BRV3 221 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 SLC25A39Q9BZJ4 359 aaPredicted RBP6.64□□□□□ -1.35
USP54-203ENST00000418501 RFNGQ9Y644 331 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 CD81P60033 236 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 TMEM88Q6PEY1 159 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 SERTAD4Q9NUC0 356 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 PGPA6NDG6 321 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 OR10J4P0C629 311 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 ZNF90Q03938 601 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 FAM120AOSQ5T036 256 aa6.64□□□□□ -1.35
USP54-203ENST00000418501 K7EIM0 57 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 PEX7O00628 323 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 BRI3O95415 125 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 GATA2P23769 480 aaPredicted RBP6.63□□□□□ -1.35
USP54-203ENST00000418501 RPEL1Q2QD12 228 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 FAM90A2PQ658T7 463 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 WDR73Q6P4I2 378 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 BAGE2Q86Y30 109 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 ARL3P36405 182 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 RANP62826 216 aaKnown RBP6.63□□□□□ -1.35
USP54-203ENST00000418501 ATG101Q9BSB4 218 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 PKD1L2Q7Z442 2459 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 IGHG2P01859 326 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 RAB5AP20339 215 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 GPR183P32249 361 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 ATP5G3P48201 142 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 CRIP2P52943 208 aaPredicted RBP6.63□□□□□ -1.35
USP54-203ENST00000418501 CBLN2Q8IUK8 224 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 FAM210BQ96KR6 192 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 FOXC2Q99958 501 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 VPREB3Q9UKI3 123 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 RPH3ALQ9UNE2 315 aa6.63□□□□□ -1.35
USP54-203ENST00000418501 CGB1A6NKQ9 187 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 MLANAQ16655 118 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 ZNF418Q8TF45 676 aaPredicted RBP6.62□□□□□ -1.35
USP54-203ENST00000418501 CDC42EP3Q9UKI2 254 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 HIVEP3Q5T1R4 2406 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 E7EUB6 86 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 H3BRN7 92 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 IGHV3-48P01763 117 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 IGF1P05019 195 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 CRYBB3P26998 211 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 ID1P41134 155 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 RPL23P62829 140 aaKnown RBP6.62□□□□□ -1.35
USP54-203ENST00000418501 KIAA0141Q14154 515 aaPredicted RBP6.62□□□□□ -1.35
USP54-203ENST00000418501 SAPCD1Q5SSQ6 148 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 C9orf139Q6ZV77 190 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 PIP4P2Q8N4L2 257 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 EPDR1Q9UM22 224 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 UFC1Q9Y3C8 167 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 GGCTO75223 188 aaKnown RBP6.62□□□□□ -1.35
USP54-203ENST00000418501 IGHV4-31P0DP07 118 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 IGHV4-38-2P0DP08 117 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 FAM3BP58499 235 aaPredicted RBP6.62□□□□□ -1.35
USP54-203ENST00000418501 SPATA31B1PQ5VZV4 182 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 SLC25A2Q9BXI2 301 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 CLEC19AQ6UXS0 136 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 TMEM219Q86XT9 240 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 DYNAPQ8N1N2 210 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 MS4A10Q96PG2 267 aa6.62□□□□□ -1.35
USP54-203ENST00000418501 ZNF331Q9NQX6 463 aaPredicted RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms