RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CISD3P0C7P0 127 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 ZNF385AQ96PM9 386 aaKnown RBP10.81□□□□□ -0.68
COL6A3-206ENST00000409809 KIAA1549Q9HCM3 1950 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.8□□□□□ -0.68
COL6A3-206ENST00000409809 RPUSD1Q9UJJ7 312 aaKnown RBP10.8□□□□□ -0.68
COL6A3-206ENST00000409809 VCYO14598 125 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 NPC2P61916 151 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 RPL32P62910 135 aaKnown RBP10.8□□□□□ -0.68
COL6A3-206ENST00000409809 RASL10AQ92737 203 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 PILRAQ9UKJ1 303 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 J3QRE1 110 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 TMEM196Q5HYL7 178 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 C9orf50Q5SZB4 431 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 CTHRC1Q96CG8 243 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 C1orf43Q9BWL3 253 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 JPT2Q9H910 190 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 NRXN2Q9P2S2 1712 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 CFPP27918 469 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 SRSF2Q01130 221 aaKnown RBP10.8□□□□□ -0.68
COL6A3-206ENST00000409809 TMEM141Q96I45 108 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 PRR14LQ5THK1 2151 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 PRR33A8MZF0 331 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 AHRRA9YTQ3 701 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 R3HDMLQ9H3Y0 253 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 ZIC3O60481 467 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 C1orf162Q8NEQ5 155 aaPredicted RBP10.8□□□□□ -0.68
COL6A3-206ENST00000409809 WDR83OSQ9Y284 106 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 PCDH15Q96QU1 1955 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 MIR17HGQ75NE6 70 aa10.8□□□□□ -0.68
COL6A3-206ENST00000409809 FOXA2Q9Y261 457 aaPredicted RBP10.8□□□□□ -0.68
COL6A3-206ENST00000409809 CDK2AP2O75956 126 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 FAM214BQ7L5A3 538 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 MRAPQ8TCY5 172 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 NPSP0C0P6 89 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 PRCDQ00LT1 54 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 REG1BP48304 166 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 ACP7Q6ZNF0 438 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 NUP35Q8NFH5 326 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 UCN2Q96RP3 112 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 OR13A1Q8NGR1 328 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 OVOL1O14753 267 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 DUSP14O95147 198 aaKnown RBP10.79□□□□□ -0.68
COL6A3-206ENST00000409809 D6R8Y8 96 aa10.79□□□□□ -0.68
COL6A3-206ENST00000409809 DEFB109BQ30KR1 87 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 LINC00312Q9Y6C7 94 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 KIR2DL5BA0A0G2JN68 375 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 KIR2DL5BA0A0G2JPC4 375 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 IGKV1D-16P01601 117 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 APELAP0DMC3 54 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 DENND4CQ5VZ89 1909 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 LHFPL1Q86WI0 220 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 KIR2DL5AQ8N109 375 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 JMJD8Q96S16 334 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 FHL5Q5TD97 284 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 CYTL1Q9NRR1 136 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 IGKV1D-42A0A075B6H8 117 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 RNF125Q96EQ8 232 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 FBXL15Q9H469 300 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 TNCP24821 2201 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 SHISA7A6NL88 538 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 PROB1E7EW31 1015 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 AGRNO00468 2067 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 PRR32B1ATL7 298 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 F8WEM9 126 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 ITGBL1O95965 494 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-206ENST00000409809 C1QTNF5Q9BXJ0 243 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 ANKRD29Q8N6D5 301 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 TRGV9Q99603 122 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 MED13LQ71F56 2210 aa10.78□□□□□ -0.68
COL6A3-206ENST00000409809 EGR1P18146 543 aa10.77□□□□□ -0.68
COL6A3-206ENST00000409809 IGHV3-21A0A0B4J1V1 117 aa10.77□□□□□ -0.68
COL6A3-206ENST00000409809 DRD3P35462 400 aa10.77□□□□□ -0.68
COL6A3-206ENST00000409809 ZAR1Q86SH2 424 aa10.77□□□□□ -0.69
COL6A3-206ENST00000409809 IGHV3OR15-7A0A075B7D8 119 aa10.77□□□□□ -0.69
COL6A3-206ENST00000409809 SFTA2Q6UW10 78 aa10.77□□□□□ -0.69
COL6A3-206ENST00000409809 TMEM256Q8N2U0 113 aa10.77□□□□□ -0.69
COL6A3-206ENST00000409809 TIMM21Q9BVV7 248 aa10.77□□□□□ -0.69
COL6A3-206ENST00000409809 ZNF497Q6ZNH5 498 aa10.77□□□□□ -0.69
COL6A3-206ENST00000409809 Q6ZS49 121 aa10.77□□□□□ -0.69
COL6A3-206ENST00000409809 AMN1Q8IY45 258 aa10.77□□□□□ -0.69
COL6A3-206ENST00000409809 PSG8Q9UQ74 426 aa10.77□□□□□ -0.69
COL6A3-206ENST00000409809 CGB1A6NKQ9 187 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 H0YIZ8 118 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 DUX5Q96PT3 197 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 IGKV3-7A0A075B6H7 116 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 CD69Q07108 199 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 AMELYQ99218 206 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 SPSB2Q99619 263 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 VGLL1Q99990 258 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 CRIM1Q9NZV1 1036 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 KIF26AQ9ULI4 1882 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-206ENST00000409809 DPH3P1Q9H4G8 78 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 hDV102S1A0JD36 115 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 TMEM14EPQ6UXP3 125 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 ATP6V0E2Q8NHE4 81 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 LGALS9BQ3B8N2 356 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 LGALS9CQ6DKI2 356 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 SPINK14Q6IE38 97 aa10.76□□□□□ -0.69
COL6A3-206ENST00000409809 KLF14Q8TD94 323 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-206ENST00000409809 CCL13Q99616 98 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms