RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 ATP5IP56385 69 aaPredicted RBP11.8□□□□□ -0.52
CUX2-202ENST00000397643 VAMP2P63027 116 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 RAB32Q13637 225 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 ZNF124Q15973 351 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 SLC25A24Q6NUK1 477 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 APRG1Q8IVJ8 170 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 SLC24A4Q8NFF2 622 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 C11orf45Q8TAV5 145 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 MFFQ9GZY8 342 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 THYN1Q9P016 225 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 FBXL17Q9UF56 701 aa11.8□□□□□ -0.52
CUX2-202ENST00000397643 PKD1P98161 4303 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 OR4C46A6NHA9 309 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 GIPP09681 153 aaPredicted RBP11.79□□□□□ -0.52
CUX2-202ENST00000397643 RNASE2P10153 161 aaKnown RBP11.79□□□□□ -0.52
CUX2-202ENST00000397643 NPY1RP25929 384 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 TAS2R30P59541 319 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 BSXQ3C1V8 233 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 ZNF414Q96IQ9 312 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 SMIM8Q96KF7 97 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 RARRES2Q99969 163 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 PSENENQ9NZ42 101 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 APLNQ9ULZ1 77 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 RCL1Q9Y2P8 373 aaKnown RBP11.79□□□□□ -0.52
CUX2-202ENST00000397643 MUC4Q99102 2169 aa11.79□□□□□ -0.52
CUX2-202ENST00000397643 hCG_2014768A0A024R1R8 64 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 PET100P0DJ07 73 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 TCTAP57738 103 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 RAB11AP62491 216 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 LRRC37A5PQ49AS3 106 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 C2orf83Q53S99 150 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 LAMTOR1Q6IAA8 161 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 C2CD4CQ8TF44 421 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 PPP1R1CQ8WVI7 109 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 MISP3Q96FF7 219 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 CSTL1Q9H114 145 aa11.78□□□□□ -0.52
CUX2-202ENST00000397643 STRAPQ9Y3F4 350 aaKnown RBP11.78□□□□□ -0.52
CUX2-202ENST00000397643 IGHV3OR16-8A0A075B7F1 116 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 OR2T8A6NH00 312 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 F8W735 103 aaPredicted RBP11.77□□□□□ -0.53
CUX2-202ENST00000397643 CORTO00230 105 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 IFNA4P05014 189 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 MFAP2P55001 183 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 RAP2BP61225 183 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 SPANXN5Q5MJ07 72 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 PVRIGQ6DKI7 326 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 OR11H2Q8NH07 326 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 VN1R17PQ8TDU5 208 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 CHRDL1Q9BU40 450 aa11.77□□□□□ -0.53
CUX2-202ENST00000397643 PAIP2BQ9ULR5 123 aaKnown RBP11.77□□□□□ -0.53
CUX2-202ENST00000397643 NDUFA4O00483 81 aa11.76□□□□□ -0.53
CUX2-202ENST00000397643 TSC22D2O75157 780 aa11.76□□□□□ -0.53
CUX2-202ENST00000397643 MPC2O95563 127 aa11.76□□□□□ -0.53
CUX2-202ENST00000397643 MED14OSP0DP75 135 aa11.76□□□□□ -0.53
CUX2-202ENST00000397643 ADMP35318 185 aa11.76□□□□□ -0.53
CUX2-202ENST00000397643 BCAP31P51572 246 aa11.76□□□□□ -0.53
CUX2-202ENST00000397643 PAX9P55771 341 aa11.76□□□□□ -0.53
CUX2-202ENST00000397643 FGL1Q08830 312 aa11.76□□□□□ -0.53
CUX2-202ENST00000397643 RNASEH2CQ8TDP1 164 aaKnown RBP11.76□□□□□ -0.53
CUX2-202ENST00000397643 BSCL2Q96G97 398 aaPredicted RBP11.76□□□□□ -0.53
CUX2-202ENST00000397643 C15orf62A8K5M9 175 aa11.75□□□□□ -0.53
CUX2-202ENST00000397643 E5RGE8 158 aa11.75□□□□□ -0.53
CUX2-202ENST00000397643 H3BP45 60 aa11.75□□□□□ -0.53
CUX2-202ENST00000397643 DEFB4AO15263 64 aa11.75□□□□□ -0.53
CUX2-202ENST00000397643 ZNF207O43670 478 aaKnown RBP11.75□□□□□ -0.53
CUX2-202ENST00000397643 TMEM50AO95807 157 aa11.75□□□□□ -0.53
CUX2-202ENST00000397643 CAV2P51636 162 aa11.75□□□□□ -0.53
CUX2-202ENST00000397643 LINC00336Q6ZUF6 198 aa11.75□□□□□ -0.53
CUX2-202ENST00000397643 THAP6Q8TBB0 222 aa11.75□□□□□ -0.53
CUX2-202ENST00000397643 PINX1Q96BK5 328 aaKnown RBP11.75□□□□□ -0.53
CUX2-202ENST00000397643 RNF2Q99496 336 aa11.75□□□□□ -0.53
CUX2-202ENST00000397643 RPS10-NUDT3A0A1W2PQS6 291 aa11.74□□□□□ -0.53
CUX2-202ENST00000397643 K7EMT4 169 aa11.74□□□□□ -0.53
CUX2-202ENST00000397643 PRSS54Q6PEW0 395 aa11.74□□□□□ -0.53
CUX2-202ENST00000397643 CHAC2Q8WUX2 184 aa11.74□□□□□ -0.53
CUX2-202ENST00000397643 TMEM170AQ8WVE7 144 aa11.74□□□□□ -0.53
CUX2-202ENST00000397643 C20orf24Q9BUV8 137 aa11.74□□□□□ -0.53
CUX2-202ENST00000397643 C11orf1Q9H5F2 150 aa11.74□□□□□ -0.53
CUX2-202ENST00000397643 IGHV3-21A0A0B4J1V1 117 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 A0A1B0GVG6 124 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 IGLL5B9A064 214 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 H0YIZ8 118 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 I3L2K1 104 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 K7EIM0 57 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 MT-CO2P00403 227 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 OPRK1P41145 380 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 P2RY1P47900 373 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 ETFRF1Q6IPR1 90 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 SPSB3Q6PJ21 355 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 TMEM14EPQ6UXP3 125 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 OR2T35Q8NGX2 323 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 ATP6V0BQ99437 205 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 RNF126Q9BV68 326 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 LYRM2Q9NU23 88 aaPredicted RBP11.73□□□□□ -0.53
CUX2-202ENST00000397643 OR5AC2Q9NZP5 309 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 SMPXQ9UHP9 88 aa11.73□□□□□ -0.53
CUX2-202ENST00000397643 CHEK1O14757 476 aa11.72□□□□□ -0.53
CUX2-202ENST00000397643 GPX4P36969 197 aaPredicted RBP11.72□□□□□ -0.53
CUX2-202ENST00000397643 Q8NAQ8 132 aa11.72□□□□□ -0.53
CUX2-202ENST00000397643 SCARB1Q8WTV0 552 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms