RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CHEK1O14757 476 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 OR5G3P0C626 314 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 SLURP1P55000 103 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 DEFB114Q30KQ6 69 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 FAM106AQ4KMX7 169 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 UNQ9165/PRO28630Q6UXU0 137 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 MISP3Q96FF7 219 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 A0A0D9SG52 128 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 PPP5D1E7EU14 171 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 TSPAN4O14817 238 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 BUB3O43684 328 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 SPANXN5Q5MJ07 72 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 PATE2Q6UY27 113 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 OR51G1Q8NGK1 321 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 NPIPB3Q92617 1050 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 GRAMD2BQ96HH9 432 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 UQCC1Q9NVA1 299 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 FBXL17Q9UF56 701 aa5.29□□□□□ -1.56
LIMA1-202ENST00000394943 ZNF256Q9Y2P7 627 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-202ENST00000394943 MEOX2P50222 304 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 RND2P52198 227 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 TIGITQ495A1 244 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 SAMD13Q5VXD3 122 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 STX12Q86Y82 276 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 ELOVL1Q9BW60 279 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 KCNIP2Q9NS61 270 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 MLXQ9UH92 298 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 LSM5Q9Y4Y9 91 aaKnown RBP5.28□□□□□ -1.56
LIMA1-202ENST00000394943 DNAH7Q8WXX0 4024 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 PLXNB1O43157 2135 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 ELOA3CA0A087WX78 387 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-202ENST00000394943 L7N2F9 121 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 NUPL2O15504 423 aaKnown RBP5.28□□□□□ -1.56
LIMA1-202ENST00000394943 HNRNPCP07910 306 aaKnown RBP eCLIP5.28□□□□□ -1.56
LIMA1-202ENST00000394943 METTL15P1P0C7V9 234 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 PSG1P11464 419 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 CBLN1P23435 193 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 GPR183P32249 361 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 VAMP2P63027 116 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 LAMTOR1Q6IAA8 161 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 TMEM182Q6ZP80 229 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-202ENST00000394943 THAP6Q8TBB0 222 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 SHANK2-AS3Q9BTD1 123 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 NPCDR1Q9BY65 106 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 SONP18583 2426 aaKnown RBP5.28□□□□□ -1.56
LIMA1-202ENST00000394943 OR2T8A6NH00 312 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 YIF1AO95070 293 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 S100A7P31151 101 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 NHLH2Q02577 135 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 USF2Q15853 346 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-202ENST00000394943 RNF2Q99496 336 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 GSKIPQ9P0R6 139 aa5.28□□□□□ -1.56
LIMA1-202ENST00000394943 AGPAT2O15120 278 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 GNG7O60262 68 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 SERF2P84101 59 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 RPEL1Q2QD12 228 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 DPPA3Q6W0C5 159 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 MRPL32Q9BYC8 188 aaKnown RBP5.27□□□□□ -1.57
LIMA1-202ENST00000394943 SPP1P10451 314 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 C9orf62Q8N4C0 152 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 Q8WTZ3 238 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 RNF125Q96EQ8 232 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 HYLS1Q96M11 299 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 PPP1R14DQ9NXH3 145 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 TLN2Q9Y4G6 2542 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 APELAP0DMC3 54 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 BMI1P35226 326 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 CMC4P56277 68 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-202ENST00000394943 KRTAP10-11P60412 298 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 ZNF266Q14584 549 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 DEFB136Q30KP8 78 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 NSUN5P1Q3KNT7 163 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 Q8N1Y9 231 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 OR2T35Q8NGX2 323 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 DCANP1Q8TF63 244 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 MRPL53Q96EL3 112 aaKnown RBP5.27□□□□□ -1.57
LIMA1-202ENST00000394943 TMEM231Q9H6L2 316 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 ARL2-SNX15V9GYD0 113 aa5.27□□□□□ -1.57
LIMA1-202ENST00000394943 BCL2L11O43521 198 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 IGHV3-11P01762 117 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 IFNA4P05014 189 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 RD3LP0DJH9 198 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 ZNF90Q03938 601 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 Q56UQ5 140 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 OR5C1Q8NGR4 320 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 FAM167A-AS1Q96KT0 104 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 SPAG8Q99932 426 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-202ENST00000394943 HINT2Q9BX68 163 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 SMAD5-AS1Q9Y6J3 95 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 MTORP42345 2549 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 IGLC2P0DOY2 106 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 FOLR2P14207 255 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 DEFA5Q01523 94 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 LGALSLQ3ZCW2 172 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-202ENST00000394943 OR1B1Q8NGR6 318 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 GATAD1Q8WUU5 269 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 A0A1W2PS18 150 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 FAM25EA8MYX2 175 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 JTBO76095 146 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 SEC11BP0C7V7 166 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms