RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 LRRK2Q5S007 2527 aa10.46□□□□□ -0.74
VPS13A-204ENST00000376634 SP9P0CG40 484 aa10.46□□□□□ -0.74
VPS13A-204ENST00000376634 NR2C2APQ86WQ0 139 aa10.46□□□□□ -0.74
VPS13A-204ENST00000376634 ITGB1BP1O14713 200 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 RAMP3O60896 148 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 ZP1P60852 638 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 CHCHD1Q96BP2 118 aaKnown RBP10.45□□□□□ -0.74
VPS13A-204ENST00000376634 IGHV3-64A0A075B6Q5 118 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 C12orf77C9JDV5 145 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 TM2D1Q9BX74 207 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 ERG28Q9UKR5 140 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 EPDR1Q9UM22 224 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 RPL32P62910 135 aaKnown RBP10.45□□□□□ -0.74
VPS13A-204ENST00000376634 HSD52Q0P140 79 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 SUMO4Q6EEV6 95 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 VWC2LB2RUY7 222 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 MIR17HGQ75NE6 70 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 TRAV5A0A0B4J249 113 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 C15orf61A6NNL5 157 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 GFI1BQ5VTD9 330 aa10.45□□□□□ -0.74
VPS13A-204ENST00000376634 LEPROTO15243 131 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 RHOGP84095 191 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 ZNF479Q96JC4 524 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 A0A087WX48 190 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 LINC01559Q495D7 138 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 TMEM14DPA8MWL7 114 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 TMEM190Q8WZ59 177 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 DLX4Q92988 240 aaPredicted RBP10.44□□□□□ -0.74
VPS13A-204ENST00000376634 COLQQ9Y215 455 aaPredicted RBP10.44□□□□□ -0.74
VPS13A-204ENST00000376634 LINC00587B1AMM8 73 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 CD200R1LQ6Q8B3 271 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 SLC25A28Q96A46 364 aa10.44□□□□□ -0.74
VPS13A-204ENST00000376634 TNRC6BQ9UPQ9 1833 aaKnown RBP10.44□□□□□ -0.74
VPS13A-204ENST00000376634 PAX4O43316 350 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 A0A1W2PRS3 328 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 CHCHD2Q9Y6H1 151 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-204ENST00000376634 FAM216BQ8N7L0 139 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 ADMP35318 185 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 SSBP2P81877 361 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-204ENST00000376634 LHFPL4Q7Z7J7 247 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 GNB1LQ9BYB4 327 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-204ENST00000376634 RAMP1O60894 148 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 CELA3BP08861 270 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 NDUFAF3Q9BU61 184 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 C1QTNF5Q9BXJ0 243 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 GPR179Q6PRD1 2367 aa10.43□□□□□ -0.74
VPS13A-204ENST00000376634 MRAPQ8TCY5 172 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 TMEM133Q9H2Q1 129 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 LINC01549A6NIU2 74 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 A0A0G2JK05 382 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 WISP3O95389 354 aaPredicted RBP10.42□□□□□ -0.74
VPS13A-204ENST00000376634 SRD5A1P18405 259 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 UCP1P25874 307 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 FAM181AQ8N9Y4 354 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 ESDP10768 282 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 PAX8Q06710 450 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 ATP5G3P48201 142 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 NPC2P61916 151 aa10.42□□□□□ -0.74
VPS13A-204ENST00000376634 CD5P06127 495 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 ERCC8Q13216 396 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 ZNF497Q6ZNH5 498 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 PPP1R32Q7Z5V6 425 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 RNASE6Q93091 150 aaKnown RBP10.41□□□□□ -0.74
VPS13A-204ENST00000376634 CMC4P56277 68 aaPredicted RBP10.41□□□□□ -0.74
VPS13A-204ENST00000376634 IQCF6A8MYZ5 107 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 C17orf100A8MU93 164 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 INS-IGF2F8WCM5 200 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 INSP01308 110 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 KLF12Q9Y4X4 402 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 OCIAD2Q56VL3 154 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 ATP5L2Q7Z4Y8 100 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 TMEM170AQ8WVE7 144 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 IFITM3Q01628 133 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 TTC28Q96AY4 2481 aa10.41□□□□□ -0.74
VPS13A-204ENST00000376634 C2orf82Q6UX34 121 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 DNAJC30Q96LL9 226 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 METRNQ9UJH8 293 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 SRP19P09132 144 aaKnown RBP10.4□□□□□ -0.74
VPS13A-204ENST00000376634 RFPL3SP0C7P2 107 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 SAP30O75446 220 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 A0A0U1RRA0 63 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 FAM90A9PA6NNJ1 464 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 A8MXK9 166 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 CCL20P78556 96 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 SP7Q8TDD2 431 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-204ENST00000376634 A0A0G2JMM0 328 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 A0A1W2PPB8 328 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 KIR3DP1A8MWS1 328 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 OVOL1O14753 267 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 WNT2P09544 360 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 FAM27E3Q08E93 113 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 SPANXA1Q9NS26 97 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 EXPH5Q8NEV8 1989 aa10.4□□□□□ -0.74
VPS13A-204ENST00000376634 GGTLC1Q9BX51 225 aa10.4□□□□□ -0.75
VPS13A-204ENST00000376634 SMPXQ9UHP9 88 aa10.4□□□□□ -0.75
VPS13A-204ENST00000376634 YPEL1O60688 119 aa10.39□□□□□ -0.75
VPS13A-204ENST00000376634 FAM90A2PQ658T7 463 aa10.39□□□□□ -0.75
VPS13A-204ENST00000376634 YPEL2Q96QA6 119 aa10.39□□□□□ -0.75
VPS13A-204ENST00000376634 HIVEP2P31629 2446 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms