RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 PNKDQ8N490 385 aa11.1□□□□□ -0.63
USP49-201ENST00000373006 PLXNB1O43157 2135 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 ZNF137PP52743 207 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 ZNF138P52744 262 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 RTL8BQ17RB0 113 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 C2orf83Q53S99 150 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 ITLN1Q8WWA0 313 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 NPIPB3Q92617 1050 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 FER1L6-AS2Q96M78 137 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 C19orf24Q9BVV8 132 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 PSMB11A5LHX3 300 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 H3BTX0 84 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 REG1BP48304 166 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 KLF5Q13887 457 aaPredicted RBP11.09□□□□□ -0.63
USP49-201ENST00000373006 MBNL2Q5VZF2 373 aaKnown RBP11.09□□□□□ -0.63
USP49-201ENST00000373006 C10orf113Q5VZT2 155 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 PATE2Q6UY27 113 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 ZNF257Q9Y2Q1 563 aa11.09□□□□□ -0.63
USP49-201ENST00000373006 C22orf46C9J442 243 aa11.08□□□□□ -0.64
USP49-201ENST00000373006 C10orf55Q5SWW7 151 aa11.08□□□□□ -0.64
USP49-201ENST00000373006 LINC00322Q6ZN03 302 aaPredicted RBP11.08□□□□□ -0.64
USP49-201ENST00000373006 CCL13Q99616 98 aa11.08□□□□□ -0.64
USP49-201ENST00000373006 PEAR1Q5VY43 1037 aaPredicted RBP11.08□□□□□ -0.64
USP49-201ENST00000373006 DYSFO75923 2080 aa11.08□□□□□ -0.64
USP49-201ENST00000373006 ACACAQ13085 2346 aa11.08□□□□□ -0.64
USP49-201ENST00000373006 RASL11AQ6T310 242 aa11.08□□□□□ -0.64
USP49-201ENST00000373006 FAM231DQ6ZW35 169 aa11.08□□□□□ -0.64
USP49-201ENST00000373006 FAM216BQ8N7L0 139 aa11.08□□□□□ -0.64
USP49-201ENST00000373006 SMIM12Q96EX1 92 aa11.08□□□□□ -0.64
USP49-201ENST00000373006 M0R296 226 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 NKX2-8O15522 239 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 HIST1H1EP10412 219 aaKnown RBP11.07□□□□□ -0.64
USP49-201ENST00000373006 TMEM178AQ8NBL3 297 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 OR1B1Q8NGR6 318 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 ADTRPQ96IZ2 230 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 PGLYRP4Q96LB8 373 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 MRPL32Q9BYC8 188 aaKnown RBP11.07□□□□□ -0.64
USP49-201ENST00000373006 NBASA2RRP1 2371 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 H3BUT2 72 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 SLC25A5P05141 298 aaKnown RBP11.07□□□□□ -0.64
USP49-201ENST00000373006 ORM2P19652 201 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 MZT1Q08AG7 82 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 FOXE3Q13461 319 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 POU2AF1Q16633 256 aa11.07□□□□□ -0.64
USP49-201ENST00000373006 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.07□□□□□ -0.64
USP49-201ENST00000373006 MRPL36Q9P0J6 103 aaKnown RBP11.07□□□□□ -0.64
USP49-201ENST00000373006 NDUFS8O00217 210 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 FAM120AOSQ5T036 256 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 LINC00305Q7Z4B0 112 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 OR1L8Q8NGR8 309 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 IGHV1-24A0A0C4DH33 117 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 C7orf71A4D174 169 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 PGPA6NDG6 321 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 SYS1-DBNDD2H3BUS1 97 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 OR2J3O76001 311 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 FXYD5Q96DB9 178 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 HARBI1Q96MB7 349 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 OTOGLQ3ZCN5 2332 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 C19orf67A6NJJ6 358 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 M0R1B8 84 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 LEPROTL1O95214 131 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 IGLV1-44P01699 117 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 ERHP84090 104 aaKnown RBP11.06□□□□□ -0.64
USP49-201ENST00000373006 BVES-AS1Q5T3Y7 98 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 SLC25A34Q6PIV7 304 aa11.06□□□□□ -0.64
USP49-201ENST00000373006 RBMXL3Q8N7X1 1067 aaKnown RBP11.06□□□□□ -0.64
USP49-201ENST00000373006 FAM231BA6NCW3 169 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 MOSP00540 346 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 HBBP68871 147 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 LRRC10Q5BKY1 277 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 GTSF1Q8WW33 167 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 MRPL20Q9BYC9 149 aaKnown RBP11.05□□□□□ -0.64
USP49-201ENST00000373006 THYN1Q9P016 225 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 A0A1B0GXF2 115 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 DLL1O00548 723 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 LHBP01229 141 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 WT1-ASQ06250 92 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 SAMD13Q5VXD3 122 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 RUSC1-AS1Q66K80 236 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 FER1L6-AS1Q8NA97 138 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 C7orf69Q9H7B7 122 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 EPDR1Q9UM22 224 aa11.05□□□□□ -0.64
USP49-201ENST00000373006 SPTA1P02549 2419 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 TACC2O95359 2948 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 APELAP0DMC3 54 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 CD59P13987 128 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 GUSBP1Q15486 140 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 TMEM186Q96B77 213 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 NDUFA4L2Q9NRX3 87 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 COL27A1Q8IZC6 1860 aaPredicted RBP11.04□□□□□ -0.64
USP49-201ENST00000373006 IGHV3-21A0A0B4J1V1 117 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 PDPNQ86YL7 162 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 FDCSPQ8NFU4 85 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 ZNF714Q96N38 554 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 SP9P0CG40 484 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 CFHR2P36980 270 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 SLC25A48Q6ZT89 311 aaKnown RBP11.04□□□□□ -0.64
USP49-201ENST00000373006 BHLHA15Q7RTS1 189 aaPredicted RBP11.04□□□□□ -0.64
USP49-201ENST00000373006 CACNG8Q8WXS5 425 aa11.04□□□□□ -0.64
USP49-201ENST00000373006 ZNF71Q9NQZ8 489 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms