RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ISG20L2Q9H9L3 353 aaKnown RBP6.75□□□□□ -1.33
HMGB1-203ENST00000341423 KRBOX1C9JBD0 128 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 CD3DP04234 171 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 GYPEP15421 78 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 SPNP16150 400 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 RPL12P30050 165 aaKnown RBP6.75□□□□□ -1.33
HMGB1-203ENST00000341423 IQCJQ1A5X6 159 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 C2orf83Q53S99 150 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 SLC2A9Q9NRM0 540 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 V9GYS6 101 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 ANGP03950 147 aaKnown RBP6.74□□□□□ -1.33
HMGB1-203ENST00000341423 USF2Q15853 346 aaPredicted RBP6.74□□□□□ -1.33
HMGB1-203ENST00000341423 TMEM229BQ8NBD8 167 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 OR1P1Q8NH06 330 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 PRELID3AQ96N28 172 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 A0A096LPF7 62 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 TRAV12-3A0A0B4J271 114 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 TCRBV5S2A0A599 114 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 TCL1AP56279 114 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 CD300LDQ6UXZ3 194 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 FGFRL1Q8N441 504 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 GATAD1Q8WUU5 269 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 C1orf159Q96HA4 380 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 RALGAPA2Q2PPJ7 1873 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 TRAV26-2A0A0B4J265 109 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 APCSP02743 223 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 KRTAP24-1Q3LI83 254 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 EGR4Q05215 589 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 TMUB2Q71RG4 321 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 NEGR1Q7Z3B1 354 aa6.74□□□□□ -1.33
HMGB1-203ENST00000341423 IGSF11Q5DX21 431 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 TEX261Q6UWH6 196 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 C5orf24Q7Z6I8 188 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 SRSF8Q9BRL6 282 aaKnown RBP6.73□□□□□ -1.33
HMGB1-203ENST00000341423 PPIL3Q9H2H8 161 aaKnown RBP6.73□□□□□ -1.33
HMGB1-203ENST00000341423 IGFBP3P17936 291 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-203ENST00000341423 OR52E5Q8NH55 327 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 TBX15Q96SF7 602 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 CST9LQ9H4G1 147 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 JPT2Q9H910 190 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 IGKV1D-42A0A075B6H8 117 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 TRAV24A0A0B4J272 114 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 ZNF727A8MUV8 499 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 PPP5D1E7EU14 171 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 SUMO1P63165 101 aaKnown RBP6.73□□□□□ -1.33
HMGB1-203ENST00000341423 SRSF1Q07955 248 aaKnown RBP eCLIP6.73□□□□□ -1.336e-14■■□□□ 12.8
HMGB1-203ENST00000341423 IRF3Q14653 427 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 TMEM126AQ9H061 195 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 TCRBV3S1A0A5B6 114 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 F8VVB4 439 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 F8VWA3 439 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 TIRAPP58753 221 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 SCGB1D4Q6XE38 83 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 MYO16Q9Y6X6 1858 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 MGAM2Q2M2H8 2515 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 PQLC2LA1A4F0 135 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 C8orf88P0DMB2 117 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 VSIG8P0DPA2 414 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 LYZL4Q96KX0 146 aa6.73□□□□□ -1.33
HMGB1-203ENST00000341423 KNCNA6PVL3 124 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 POLR2IP36954 125 aaKnown RBP6.72□□□□□ -1.33
HMGB1-203ENST00000341423 KIR2DL5BQ8NHK3 375 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 PHLDA1Q8WV24 401 aaPredicted RBP6.72□□□□□ -1.33
HMGB1-203ENST00000341423 GABARAPL3Q9BY60 117 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 FRRS1LQ9P0K9 344 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 S100A7L2Q5SY68 101 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 GOLT1AQ6ZVE7 132 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 DEFB125Q8N687 156 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 LINC00477Q96M19 166 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 BCL7BQ9BQE9 202 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 UBE2D4Q9Y2X8 147 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 LY96Q9Y6Y9 160 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 DOCK5Q9H7D0 1870 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 DEFB4AO15263 64 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 RHOHQ15669 191 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 UBE2V2Q15819 145 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 RASL11AQ6T310 242 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 CYP2G1PQ6ZSU1 146 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 LINC00305Q7Z4B0 112 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 ALX4Q9H161 411 aaPredicted RBP6.72□□□□□ -1.33
HMGB1-203ENST00000341423 TRBV25-1A0A075B6N4 114 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 H3BTX0 84 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 ZNF818PQ6ZRF7 136 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 OR5C1Q8NGR4 320 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 CITED4Q96RK1 184 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 AMELYQ99218 206 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 KCNE5Q9UJ90 142 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 FUT9Q9Y231 359 aa6.72□□□□□ -1.33
HMGB1-203ENST00000341423 SMIM7Q9BQ49 75 aa6.71□□□□□ -1.33
HMGB1-203ENST00000341423 MRPL32Q9BYC8 188 aaKnown RBP6.71□□□□□ -1.33
HMGB1-203ENST00000341423 GAGE12JA6NER3 117 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 CXorf1O96002 111 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 CGAP01215 116 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 SCGB1C2P0DMR2 95 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 GAGE1Q13065 139 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 GAGE4Q13068 117 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 GAGE5Q13069 117 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 GAGE13Q4V321 117 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 C6orf226Q5I0X4 101 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 FAM122BQ7Z309 247 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms