RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ITPR2Q14571 2701 aa12.13□□□□□ -0.47
LIMS1-202ENST00000338045 ZNF469Q96JG9 3925 aaPredicted RBP12.12□□□□□ -0.47
LIMS1-202ENST00000338045 A0A1B0GV90 55 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 CXorf1O96002 111 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 IGF1P05019 195 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 SRP19P09132 144 aaKnown RBP12.12□□□□□ -0.47
LIMS1-202ENST00000338045 TAGLN2P37802 199 aaKnown RBP12.12□□□□□ -0.47
LIMS1-202ENST00000338045 IER3P46695 156 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 RXFP4Q8TDU9 374 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 RNF2Q99496 336 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 PRDM13Q9H4Q3 707 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 DNAJC4Q9NNZ3 241 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 MANBALQ9NQG1 85 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 TRBV9A0A0B4J1U6 114 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 G3V318 75 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 IGKV1-17P01599 117 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 IGHV4-59P01825 116 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 IGHG2P01859 326 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 ARL14EPLP0DKL9 152 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 PLP1P60201 277 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 SPNS3Q6ZMD2 512 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 MIR17HGQ75NE6 70 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 OR1L4Q8NGR5 311 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 OR5R1Q8NH85 324 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 PFDN5Q99471 154 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 MRPL32Q9BYC8 188 aaKnown RBP12.12□□□□□ -0.47
LIMS1-202ENST00000338045 GSX1Q9H4S2 264 aaPredicted RBP12.12□□□□□ -0.47
LIMS1-202ENST00000338045 CCDC168Q8NDH2 2452 aa12.12□□□□□ -0.47
LIMS1-202ENST00000338045 F8W735 103 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-202ENST00000338045 OR2J3O76001 311 aa12.11□□□□□ -0.47
LIMS1-202ENST00000338045 NDUFB8O95169 186 aa12.11□□□□□ -0.47
LIMS1-202ENST00000338045 FCGR2BP31994 310 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-202ENST00000338045 NPBWR1P48145 328 aa12.11□□□□□ -0.47
LIMS1-202ENST00000338045 MFAP4P55083 255 aa12.11□□□□□ -0.47
LIMS1-202ENST00000338045 PATE2Q6UY27 113 aa12.11□□□□□ -0.47
LIMS1-202ENST00000338045 FASNP49327 2511 aaKnown RBP12.11□□□□□ -0.47
LIMS1-202ENST00000338045 ELOA3CA0A087WX78 387 aaPredicted RBP12.1□□□□□ -0.47
LIMS1-202ENST00000338045 GUCA2BQ16661 112 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 RNF212Q495C1 297 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 Q6YL49 198 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 SVBPQ8N300 66 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 VN1R17PQ8TDU5 208 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 NIT2Q9NQR4 276 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 C21orf62Q9NYP8 219 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 TECRQ9NZ01 308 aaKnown RBP12.1□□□□□ -0.47
LIMS1-202ENST00000338045 FBXL7Q9UJT9 491 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 TRAV30A0A087WSZ9 112 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 TRAV41A0A0B4J266 112 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 COX7A2P2O60397 106 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 GCHFRP30047 84 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 TEX29Q8N6K0 151 aa12.1□□□□□ -0.47
LIMS1-202ENST00000338045 TEX15Q9BXT5 2789 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 SMAD7O15105 426 aaKnown RBP12.09□□□□□ -0.47
LIMS1-202ENST00000338045 C8orf88P0DMB2 117 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 PSG1P11464 419 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 TAS2R45P59539 299 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 CD81P60033 236 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 BLCAPP62952 87 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 DEFA5Q01523 94 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 MEF2BQ02080 365 aaPredicted RBP12.09□□□□□ -0.47
LIMS1-202ENST00000338045 KRTAP1-1Q07627 177 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 TIGITQ495A1 244 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 C10orf113Q5VZT2 155 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 PQLC2Q6ZP29 291 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 TXN2Q99757 166 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 C2orf88Q9BSF0 95 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 DOK5Q9P104 306 aa12.09□□□□□ -0.47
LIMS1-202ENST00000338045 TCAPO15273 167 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 PAGE4O60829 102 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 C9orf152Q5JTZ5 239 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 SOHLH1Q5JUK2 328 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 MORN5Q5VZ52 161 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 CYB561D1Q8N8Q1 229 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 NECAP1Q8NC96 275 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 ZNF503Q96F45 646 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 FAM167A-AS1Q96KT0 104 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 ZNF580Q9UK33 172 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 DNASE2O00115 360 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-202ENST00000338045 GNG7O60262 68 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 BRI3O95415 125 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 TOMM40O96008 361 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 RD3LP0DJH9 198 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 YPEL3P61236 119 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-202ENST00000338045 RHOGP84095 191 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 ATRAIDQ6UW56 229 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 VPREB3Q9UKI3 123 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 S4R3C0 116 aa12.08□□□□□ -0.48
LIMS1-202ENST00000338045 AKAP9Q99996 3911 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 HYPMO75409 117 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 ORM2P19652 201 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 PPIFP30405 207 aaKnown RBP12.07□□□□□ -0.48
LIMS1-202ENST00000338045 BMI1P35226 326 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 C15orf32Q32M92 178 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 Q6ZS46 218 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 ZNF502Q8TBZ5 544 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 UHRF2Q96PU4 802 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 SLC25A2Q9BXI2 301 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 ZNF355PQ9NSJ1 428 aa12.07□□□□□ -0.48
LIMS1-202ENST00000338045 FAM90A2PQ658T7 463 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 LINC00305Q7Z4B0 112 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms