RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 MIC13Q5XKP0 118 aa12.84□□□□□ -0.35
PDLIM1-201ENST00000329399 FAM110DQ8TAY7 271 aaPredicted RBP12.84□□□□□ -0.35
PDLIM1-201ENST00000329399 RAB24Q969Q5 203 aa12.84□□□□□ -0.35
PDLIM1-201ENST00000329399 NARS2Q96I59 477 aaKnown RBP12.84□□□□□ -0.35
PDLIM1-201ENST00000329399 TXN2Q99757 166 aa12.84□□□□□ -0.35
PDLIM1-201ENST00000329399 MRPL32Q9BYC8 188 aaKnown RBP12.84□□□□□ -0.35
PDLIM1-201ENST00000329399 MANBALQ9NQG1 85 aa12.84□□□□□ -0.35
PDLIM1-201ENST00000329399 ZNF580Q9UK33 172 aa12.84□□□□□ -0.35
PDLIM1-201ENST00000329399 ELOA3CA0A087WX78 387 aaPredicted RBP12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 ZFP92A6NM28 416 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 BRI3O95415 125 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 NPBWR1P48145 328 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 MFAP2P55001 183 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 TAS2R45P59539 299 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 TCTEX1D4Q5JR98 221 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 C9orf152Q5JTZ5 239 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 ZNF506Q5JVG8 444 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 FAM122CQ6P4D5 195 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 S100A7AQ86SG5 101 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 ATP6V0BQ99437 205 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 SLC35B3Q9H1N7 401 aa12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 GAR1Q9NY12 217 aaKnown RBP12.83□□□□□ -0.36
PDLIM1-201ENST00000329399 IGLV11-55A0A075B6I3 123 aa12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 IGKV1OR2-108A0A075B7D4 117 aa12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 CXorf1O96002 111 aa12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 FCGR2BP31994 310 aaPredicted RBP12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 RND2P52198 227 aa12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 MLANAQ16655 118 aa12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 LCN15Q6UWW0 184 aa12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 SLC35E3Q7Z769 313 aa12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 NOL4LQ96MY1 436 aaPredicted RBP12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 SCRT1Q9BWW7 348 aa12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 LINC00527Q9UJ94 153 aa12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 CARHSP1Q9Y2V2 147 aaKnown RBP12.82□□□□□ -0.36
PDLIM1-201ENST00000329399 CLN5O75503 358 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 STAG3L2P0CL84 134 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 STAG3L3P0CL85 134 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 EGR2P11161 476 aaPredicted RBP12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 MFAP4P55083 255 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 PLP1P60201 277 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 ASPHD1Q5U4P2 390 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 CCDC28AQ8IWP9 274 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 VN1R17PQ8TDU5 208 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 DNAJC4Q9NNZ3 241 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 VAX2Q9UIW0 290 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 ARL2-SNX15V9GYD0 113 aa12.81□□□□□ -0.36
PDLIM1-201ENST00000329399 ADARB2-AS1A8MUL3 147 aa12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 IGF1P05019 195 aa12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 OR5G3P0C626 314 aa12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 BCL2P10415 239 aa12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 PQLC2Q6ZP29 291 aa12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 SVBPQ8N300 66 aa12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 LINC00052Q96N35 136 aa12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 CITED2Q99967 270 aaPredicted RBP12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 SLC25A22Q9H936 323 aa12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 FUT9Q9Y231 359 aa12.8□□□□□ -0.36
PDLIM1-201ENST00000329399 IGKV1D-37A0A075B6S9 117 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 F8W036 122 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 H3BUA1 57 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 K7EIM0 57 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 IGHG2P01859 326 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 S100A7P31151 101 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 CCL20P78556 96 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 NDPQ00604 133 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 UNQ5815/PRO19632Q6UWF5 114 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 FANCD2OSQ96PS1 177 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 TECRQ9NZ01 308 aaKnown RBP12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 RNF24Q9Y225 148 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 DMRT1Q9Y5R6 373 aa12.79□□□□□ -0.36
PDLIM1-201ENST00000329399 LOC102723971A0A1B0GUV8 181 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 ZNF329Q86UD4 541 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 STXBP6Q8NFX7 210 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 OR5AU1Q8NGC0 362 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 TMEM190Q8WZ59 177 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 HSPB9Q9BQS6 159 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 FAM103A1Q9BTL3 118 aaKnown RBP12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 TMEM167BQ9NRX6 74 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 GNG13Q9P2W3 67 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 ATP6V0E1O15342 81 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 SFTA3P0C7M3 94 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 APELAP0DMC3 54 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 YPEL3P61236 119 aaPredicted RBP12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 SRSF3P84103 164 aaKnown RBP12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 NECAP1Q8NC96 275 aa12.78□□□□□ -0.36
PDLIM1-201ENST00000329399 TRBV9A0A0B4J1U6 114 aa12.77□□□□□ -0.37
PDLIM1-201ENST00000329399 COX7A2P2O60397 106 aa12.77□□□□□ -0.37
PDLIM1-201ENST00000329399 IGLC1P0CG04 106 aa12.77□□□□□ -0.37
PDLIM1-201ENST00000329399 ICAM4Q14773 271 aa12.77□□□□□ -0.37
PDLIM1-201ENST00000329399 NSUN5P1Q3KNT7 163 aa12.77□□□□□ -0.37
PDLIM1-201ENST00000329399 FAM78BQ5VT40 261 aa12.77□□□□□ -0.37
PDLIM1-201ENST00000329399 C10orf113Q5VZT2 155 aa12.77□□□□□ -0.37
PDLIM1-201ENST00000329399 SSX7Q7RTT5 188 aa12.77□□□□□ -0.37
PDLIM1-201ENST00000329399 TRAV41A0A0B4J266 112 aa12.76□□□□□ -0.37
PDLIM1-201ENST00000329399 A0A1B0GV50 99 aa12.76□□□□□ -0.37
PDLIM1-201ENST00000329399 PSMB11A5LHX3 300 aa12.76□□□□□ -0.37
PDLIM1-201ENST00000329399 TMEM250H0YL14 139 aa12.76□□□□□ -0.37
PDLIM1-201ENST00000329399 AP4M1O00189 453 aa12.76□□□□□ -0.37
PDLIM1-201ENST00000329399 SNAPINO95295 136 aa12.76□□□□□ -0.37
PDLIM1-201ENST00000329399 APOC3P02656 99 aa12.76□□□□□ -0.37
PDLIM1-201ENST00000329399 C8orf88P0DMB2 117 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms