RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 HIST1H2BBP33778 126 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 HIST1H2BDP58876 126 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 SELENOTP62341 195 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 HIST1H2BCP62807 126 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 HIST2H2BEQ16778 126 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 OR5AU1Q8NGC0 362 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 C22orf15Q8WYQ4 148 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 HIST1H2BHQ93079 126 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 HIST1H2BNQ99877 126 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 HIST1H2BMQ99879 126 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 HSPB9Q9BQS6 159 aa17.73■□□□□ 0.43
PDLIM2-202ENST00000308354 IGHV7-81A0A0B4J1V7 117 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 A0A0U1RQK1 487 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 GGTLC3B5MD39 225 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 OCC1Q8TAD7 63 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 PFDN5Q99471 154 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 RNF2Q99496 336 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 PYGO2Q9BRQ0 406 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 ZNF355PQ9NSJ1 428 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 NAV2Q8IVL1 2488 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 A0A1W2PPQ1 181 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 BPIFB3P59826 476 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 TMEM219Q86XT9 240 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 OR1L4Q8NGR5 311 aa17.72■□□□□ 0.43
PDLIM2-202ENST00000308354 B4DSR2 109 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 AVPP01185 164 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 UBE2L3P68036 154 aaKnown RBP17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 FRZBQ92765 325 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 C1RLQ9NZP8 487 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 ZANQ9Y493 2812 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 K7EIM0 57 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 PYYP10082 97 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 CD99P14209 185 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 ORM2P19652 201 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 CRYBB3P26998 211 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 SFRP2Q96HF1 295 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 RASL11BQ9BPW5 248 aa17.71■□□□□ 0.43
PDLIM2-202ENST00000308354 DOPEY2Q9Y3R5 2298 aa17.7■□□□□ 0.42
PDLIM2-202ENST00000308354 NBPF19A0A087WUL8 3843 aa17.7■□□□□ 0.42
PDLIM2-202ENST00000308354 EGR2P11161 476 aaPredicted RBP17.7■□□□□ 0.42
PDLIM2-202ENST00000308354 SLC25A16P16260 332 aa17.7■□□□□ 0.42
PDLIM2-202ENST00000308354 NDUFA6P56556 154 aa17.7■□□□□ 0.42
PDLIM2-202ENST00000308354 ZNF98A6NK75 572 aa17.7■□□□□ 0.42
PDLIM2-202ENST00000308354 PHOX2AO14813 284 aa17.7■□□□□ 0.42
PDLIM2-202ENST00000308354 HIST2H2BCQ6DN03 193 aa17.7■□□□□ 0.42
PDLIM2-202ENST00000308354 C12orf57Q99622 126 aa17.7■□□□□ 0.42
PDLIM2-202ENST00000308354 K7EN84 100 aa17.69■□□□□ 0.42
PDLIM2-202ENST00000308354 SRP14P37108 136 aaKnown RBP17.69■□□□□ 0.42
PDLIM2-202ENST00000308354 TRGV9Q99603 122 aa17.69■□□□□ 0.42
PDLIM2-202ENST00000308354 MDFIC2A0A1B0GVS7 189 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 TGOLN2O43493 480 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 TRGC1P0CF51 173 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 SUMO1P63165 101 aaKnown RBP17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 LINC00305Q7Z4B0 112 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 OR1B1Q8NGR6 318 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 RBM14Q96PK6 669 aaKnown RBP17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 FANCD2OSQ96PS1 177 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 SRD5A3Q9H8P0 318 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 A0A1W2PRE2 83 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 FAM3BP58499 235 aaPredicted RBP17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 PAXXQ9BUH6 204 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 APCP25054 2843 aa17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.68■□□□□ 0.42
PDLIM2-202ENST00000308354 A0A096LNT2 108 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 LINC01548A6NM66 108 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 C9JCJ5 164 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 GGCTO75223 188 aaKnown RBP17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 HLA-DRB1P01911 266 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 SNRPCP09234 159 aaKnown RBP17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 IGLC1P0CG04 106 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 TEX38Q6PEX7 206 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 PIFOQ8TCI5 191 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 NPIPB5A8MRT5 1133 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 PPP5D1E7EU14 171 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 MEOX2P50222 304 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 TIGITQ495A1 244 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 TTC9CQ8N5M4 171 aa17.67■□□□□ 0.42
PDLIM2-202ENST00000308354 ELOA3CA0A087WX78 387 aaPredicted RBP17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 RNF223E7ERA6 249 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 PPP1R2P9O14990 202 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 KCNIP4Q6PIL6 250 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 IGLV11-55A0A075B6I3 123 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 HELTA6NFD8 242 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 PSG1P11464 419 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 HOXA5P20719 270 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 ECSCRQ19T08 205 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 CENPWQ5EE01 88 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 TMUB1Q9BVT8 246 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 OR51M1Q9H341 326 aa17.66■□□□□ 0.42
PDLIM2-202ENST00000308354 CSPG4Q6UVK1 2322 aa17.65■□□□□ 0.42
PDLIM2-202ENST00000308354 ATP6V0E1O15342 81 aa17.65■□□□□ 0.42
PDLIM2-202ENST00000308354 PLA2G2AP14555 144 aa17.65■□□□□ 0.42
PDLIM2-202ENST00000308354 IGHV3-23P01764 117 aa17.64■□□□□ 0.42
PDLIM2-202ENST00000308354 GNG4P50150 75 aa17.64■□□□□ 0.42
PDLIM2-202ENST00000308354 DEFB113Q30KQ7 82 aa17.64■□□□□ 0.42
PDLIM2-202ENST00000308354 OR1L6Q8NGR2 347 aa17.64■□□□□ 0.42
PDLIM2-202ENST00000308354 FXYD5Q96DB9 178 aa17.64■□□□□ 0.42
PDLIM2-202ENST00000308354 OR2J3O76001 311 aa17.64■□□□□ 0.41
PDLIM2-202ENST00000308354 IGKV1-17P01599 117 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms