RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CFHR4Q92496 578 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 PFDN5Q99471 154 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 TMUB1Q9BVT8 246 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 KCNIP4Q6PIL6 250 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 TMEM219Q86XT9 240 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 OR10G8Q8NGN5 311 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 ANAPC16Q96DE5 110 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 FAM167A-AS1Q96KT0 104 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 TMEM242Q9NWH2 141 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 S100A9P06702 114 aaKnown RBP9.11□□□□□ -0.95
CUX1-202ENST00000292538 NDPQ00604 133 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 LURAP1LQ8IV03 231 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 LINC00527Q9UJ94 153 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 OR2J3O76001 311 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 FSTL3O95633 263 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 CA1P00915 261 aaPredicted RBP9.11□□□□□ -0.95
CUX1-202ENST00000292538 RD3LP0DJH9 198 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 LMO4P61968 165 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 SELENOTP62341 195 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 Q56UQ5 140 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 CCDC144NLQ6NUI1 221 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 MALSU1Q96EH3 234 aa9.11□□□□□ -0.95
CUX1-202ENST00000292538 IGHV2-70DA0A0C4DH43 119 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 PGPA6NDG6 321 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 ODF3BA8MYP8 253 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 SLC25A5P05141 298 aaKnown RBP9.1□□□□□ -0.95
CUX1-202ENST00000292538 MAS1LP35410 378 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 PRR31Q5SQ13 230 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 C1orf122Q6ZSJ8 110 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 FAM168AQ92567 244 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 ARPC1AQ92747 370 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 TBX15Q96SF7 602 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 ASCL2Q99929 193 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 ZNF98A6NK75 572 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 INS-IGF2F8WCM5 200 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 GNG7O60262 68 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 TMEM249Q2WGJ8 235 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 C9orf152Q5JTZ5 239 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 GPR61Q9BZJ8 451 aa9.1□□□□□ -0.95
CUX1-202ENST00000292538 SOX21Q9Y651 276 aaPredicted RBP9.1□□□□□ -0.95
CUX1-202ENST00000292538 IGHV4-61A0A0C4DH41 118 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 PSMB11A5LHX3 300 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 S100A2P29034 98 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 TEX38Q6PEX7 206 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 TMEM116Q8NCL8 245 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 MAPK1IP1LQ8NDC0 245 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 C19orf24Q9BVV8 132 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 NAV2Q8IVL1 2488 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 OR2T8A6NH00 312 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 PPP1R2P9O14990 202 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 IL4P05112 153 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 FAM106CPP0CH98 169 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 PDLIM4P50479 330 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 BCL6BQ8N143 479 aaPredicted RBP9.09□□□□□ -0.95
CUX1-202ENST00000292538 PIP4P2Q8N4L2 257 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 THAP8Q8NA92 274 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 MS4A10Q96PG2 267 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 MRPL32Q9BYC8 188 aaKnown RBP9.09□□□□□ -0.95
CUX1-202ENST00000292538 SIRPDQ9H106 197 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 HIGD1AQ9Y241 93 aa9.09□□□□□ -0.95
CUX1-202ENST00000292538 ZANQ9Y493 2812 aa9.09□□□□□ -0.96
CUX1-202ENST00000292538 TRBV24-1A0A075B6N3 115 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 ELOA3CA0A087WX78 387 aaPredicted RBP9.08□□□□□ -0.96
CUX1-202ENST00000292538 CORTO00230 105 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 UBE2CO00762 179 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 NBEAP1P0C6P0 100 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 IGLC1P0CG04 106 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 FABP4P15090 132 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 MEOX2P50222 304 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 RAB4BP61018 213 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 BBC3Q96PG8 261 aaPredicted RBP9.08□□□□□ -0.96
CUX1-202ENST00000292538 TXNDC17Q9BRA2 123 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 I3L2K1 104 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 K7EIM0 57 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 FRMD6-AS1P0C7T7 363 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 FCGR2BP31994 310 aaPredicted RBP9.08□□□□□ -0.96
CUX1-202ENST00000292538 IMMP2LQ96T52 175 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 TRGV9Q99603 122 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 TRAV40A0A0B4J280 105 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 LINC01548A6NM66 108 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 LY6EQ16553 131 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 OR8I2Q8N0Y5 310 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 EXOC3-AS1Q8N2X6 119 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 OR10D4PQ8NGN7 298 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 FXYD5Q96DB9 178 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 RNF5Q99942 180 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 HSPB9Q9BQS6 159 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 NIT2Q9NQR4 276 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 TRAPPC1Q9Y5R8 145 aa9.08□□□□□ -0.96
CUX1-202ENST00000292538 TLN2Q9Y4G6 2542 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 IGHV4-30-2A0A087WSY4 118 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 ISLRO14498 428 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 IGKV1-17P01599 117 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 CRYGCP07315 174 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 COL8A1P27658 744 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 CLEC2AQ6UVW9 174 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 BAGE2Q86Y30 109 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 RNF2Q99496 336 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 SRD5A3Q9H8P0 318 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 GNB4Q9HAV0 340 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms