RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 AMTP48728 403 aa13.33□□□□□ -0.28
VPS54-201ENST00000272322 UBE2G1P62253 170 aa13.33□□□□□ -0.28
VPS54-201ENST00000272322 LDLRAD2Q5SZI1 272 aa13.33□□□□□ -0.28
VPS54-201ENST00000272322 OR2D3Q8NGH3 330 aa13.33□□□□□ -0.28
VPS54-201ENST00000272322 TPPP3Q9BW30 176 aa13.33□□□□□ -0.28
VPS54-201ENST00000272322 M0QZ24 198 aa13.32□□□□□ -0.28
VPS54-201ENST00000272322 LINC00310P59036 64 aa13.32□□□□□ -0.28
VPS54-201ENST00000272322 EXOC3-AS1Q8N2X6 119 aa13.32□□□□□ -0.28
VPS54-201ENST00000272322 TCRBV4S1A1TA0A5B7 111 aa13.32□□□□□ -0.28
VPS54-201ENST00000272322 FOXA3P55318 350 aaPredicted RBP13.32□□□□□ -0.28
VPS54-201ENST00000272322 TMEM68Q96MH6 324 aa13.32□□□□□ -0.28
VPS54-201ENST00000272322 NAGKQ9UJ70 344 aa13.32□□□□□ -0.28
VPS54-201ENST00000272322 IGLC7A0M8Q6 106 aa13.32□□□□□ -0.28
VPS54-201ENST00000272322 IGLV2-8P01709 118 aa13.32□□□□□ -0.28
VPS54-201ENST00000272322 ZNF672Q499Z4 452 aaPredicted RBP13.32□□□□□ -0.28
VPS54-201ENST00000272322 FBLN7Q53RD9 439 aa13.32□□□□□ -0.28
VPS54-201ENST00000272322 IGHV1-3A0A0C4DH29 117 aa13.31□□□□□ -0.28
VPS54-201ENST00000272322 TIMM23O14925 209 aa13.31□□□□□ -0.28
VPS54-201ENST00000272322 LPAR2Q9HBW0 351 aa13.31□□□□□ -0.28
VPS54-201ENST00000272322 FLNCQ14315 2725 aa13.31□□□□□ -0.28
VPS54-201ENST00000272322 EREGO14944 169 aa13.31□□□□□ -0.28
VPS54-201ENST00000272322 PPP1R27Q86WC6 154 aa13.31□□□□□ -0.28
VPS54-201ENST00000272322 TXNDC17Q9BRA2 123 aa13.31□□□□□ -0.28
VPS54-201ENST00000272322 LINC00574Q9H8X3 128 aa13.31□□□□□ -0.28
VPS54-201ENST00000272322 UTP20O75691 2785 aaKnown RBP13.3□□□□□ -0.28
VPS54-201ENST00000272322 NCBP2LA6PVI3 153 aaKnown RBP13.3□□□□□ -0.28
VPS54-201ENST00000272322 A8MWP6 167 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 BPIFB3P59826 476 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 C17orf77Q96MU5 243 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 WNT10AQ9GZT5 417 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 POLR3KQ9Y2Y1 108 aaPredicted RBP13.3□□□□□ -0.28
VPS54-201ENST00000272322 PKD1L2Q7Z442 2459 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 PEX7O00628 323 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 NBEAP1P0C6P0 100 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 SLAQ13239 276 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 TMEM249Q2WGJ8 235 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 BCL6BQ8N143 479 aaPredicted RBP13.3□□□□□ -0.28
VPS54-201ENST00000272322 NCOR1P1Q9H4R4 102 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 ZNF331Q9NQX6 463 aaPredicted RBP13.3□□□□□ -0.28
VPS54-201ENST00000272322 SIGLEC9Q9Y336 463 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 MUC21A0A0G2JKD1 596 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 MUC21A0A140T8X8 626 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 GATCO43716 136 aaKnown RBP13.3□□□□□ -0.28
VPS54-201ENST00000272322 C3orf36Q3SXR2 165 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 COA6Q5JTJ3 125 aaKnown RBP13.3□□□□□ -0.28
VPS54-201ENST00000272322 MUC21Q5SSG8 566 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 NUDT10Q8NFP7 164 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 CACNG8Q8WXS5 425 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 C11orf52Q96A22 123 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 NUDT11Q96G61 164 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 CSMD2Q7Z408 3487 aa13.3□□□□□ -0.28
VPS54-201ENST00000272322 G0S2P27469 103 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 PMCHL1Q16048 86 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 SRSF12Q8WXF0 261 aaKnown RBP13.29□□□□□ -0.28
VPS54-201ENST00000272322 PSG1P11464 419 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 DLX6P56179 175 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 LINC00322Q6ZN03 302 aaPredicted RBP13.29□□□□□ -0.28
VPS54-201ENST00000272322 REC114Q7Z4M0 266 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 LINC00469Q8N7U9 141 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 SIGLECL1Q8N7X8 197 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 CLEC7AQ9BXN2 247 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 TLN2Q9Y4G6 2542 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 A6NNC1 897 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 C9JCJ5 164 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 BUB1B-PAK6H3BSN5 160 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 K7ENP7 123 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 CASP6P55212 293 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 LY6DQ14210 128 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 ZNF841Q6ZN19 808 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 ZNF329Q86UD4 541 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 C22orf15Q8WYQ4 148 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 FXYD5Q96DB9 178 aa13.29□□□□□ -0.28
VPS54-201ENST00000272322 A0A1W2PRE2 83 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 HIGD1CA8MV81 97 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 H0Y8G0 127 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 GCGP01275 180 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 PDLIM4P50479 330 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 ZMAT5Q9UDW3 170 aaKnown RBP13.28□□□□□ -0.28
VPS54-201ENST00000272322 B9A039 149 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 MC5RP33032 325 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 PRRX1P54821 245 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 MRGPRG-AS1Q2M3A8 158 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 LCN12Q6JVE5 192 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 OR5R1Q8NH85 324 aa13.28□□□□□ -0.28
VPS54-201ENST00000272322 TBL2Q9Y4P3 447 aaKnown RBP13.28□□□□□ -0.28
VPS54-201ENST00000272322 PSMB11A5LHX3 300 aa13.27□□□□□ -0.28
VPS54-201ENST00000272322 TPPP2P59282 170 aa13.27□□□□□ -0.28
VPS54-201ENST00000272322 YPEL3P61236 119 aaPredicted RBP13.27□□□□□ -0.28
VPS54-201ENST00000272322 SH2D7A6NKC9 451 aaPredicted RBP13.27□□□□□ -0.28
VPS54-201ENST00000272322 HYPMO75409 117 aa13.27□□□□□ -0.28
VPS54-201ENST00000272322 NBL1P41271 181 aa13.27□□□□□ -0.28
VPS54-201ENST00000272322 PRNTQ86SH4 94 aa13.27□□□□□ -0.28
VPS54-201ENST00000272322 CIARTQ8N365 385 aaPredicted RBP13.27□□□□□ -0.28
VPS54-201ENST00000272322 OR1L4Q8NGR5 311 aa13.27□□□□□ -0.28
VPS54-201ENST00000272322 RNASEH2CQ8TDP1 164 aaKnown RBP13.27□□□□□ -0.28
VPS54-201ENST00000272322 PGLYRP4Q96LB8 373 aa13.27□□□□□ -0.28
VPS54-201ENST00000272322 CDC42EP3Q9UKI2 254 aa13.27□□□□□ -0.28
VPS54-201ENST00000272322 CELSR2Q9HCU4 2923 aa13.27□□□□□ -0.29
VPS54-201ENST00000272322 CX3CL1P78423 397 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 RPL19P84098 196 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms