RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 VKORC1Q9BQB6 163 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 SEPSECSQ9HD40 501 aaKnown RBP8.87□□□□□ -0.99
CD44-201ENST00000263398 RFNGQ9Y644 331 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 BMPERQ8N8U9 685 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 ATRXP46100 2492 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 TRAV5A0A0B4J249 113 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 LYNX1G3V0Z9 82 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 LYNX1P0DP58 116 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 CD24P25063 80 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 PRB3Q04118 309 aaPredicted RBP8.87□□□□□ -0.99
CD44-201ENST00000263398 CD177Q8N6Q3 437 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 BEX4Q9NWD9 120 aaPredicted RBP8.87□□□□□ -0.99
CD44-201ENST00000263398 SLC25A15Q9Y619 301 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 SPCS1Q9Y6A9 102 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 RHOGP84095 191 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 C5orf24Q7Z6I8 188 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 NUDT10Q8NFP7 164 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 CHCHD1Q96BP2 118 aaKnown RBP8.86□□□□□ -0.99
CD44-201ENST00000263398 NUDT11Q96G61 164 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 MGST2Q99735 147 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 FAM181BA6NEQ2 426 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 IGHV3-11P01762 117 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 CDKN1AP38936 164 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 LEPP41159 167 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 TMEM167AQ8TBQ9 72 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 C5orf30Q96GV9 206 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 ZNF581Q9P0T4 197 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 MRPS16Q9Y3D3 137 aaKnown RBP8.86□□□□□ -0.99
CD44-201ENST00000263398 LILRA1O75019 489 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 SPATA31B1PQ5VZV4 182 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 FAM71F2Q6NXP2 309 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 MDS2Q8NDY4 140 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 OR5AN1Q8NGI8 311 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 MRAP2Q96G30 205 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 RSPO3Q9BXY4 272 aaPredicted RBP8.86□□□□□ -0.99
CD44-201ENST00000263398 LY96Q9Y6Y9 160 aa8.86□□□□□ -0.99
CD44-201ENST00000263398 A0A1B0GWB2 263 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 PSMB11A5LHX3 300 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 HAX1O00165 279 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 TNFSF13O75888 250 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 SLC25A48Q6ZT89 311 aaKnown RBP8.85□□□□□ -0.99
CD44-201ENST00000263398 COQ2Q96H96 371 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 METRNQ9UJH8 293 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 LINC00473A8K010 186 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 ETV2O00321 342 aaPredicted RBP8.85□□□□□ -0.99
CD44-201ENST00000263398 DERL1Q9BUN8 251 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 A0A0G2JRQ6 117 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 SCGB1A1P11684 91 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 Q6ZRM9 215 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 OR4X2Q8NGF9 303 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 TRAV3A0A0B4J244 114 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 DNAL4O96015 105 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 ADCYAP1P18509 176 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 TTC32Q5I0X7 151 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 ANAPC1Q9H1A4 1944 aa8.85□□□□□ -0.99
CD44-201ENST00000263398 TRAV21A0A0B4J279 112 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 MYOD1P15172 320 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 RASL11AQ6T310 242 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 IGHV2-26A0A0B4J1V2 119 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 C15orf62A8K5M9 175 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 F2Z2F3 143 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 THBDP07204 575 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 IGHV1-8P0DP01 117 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 PSG1P11464 419 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 RNASE4P34096 147 aaKnown RBP8.84□□□□□ -0.99
CD44-201ENST00000263398 NTF4P34130 210 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 PYY3Q5JQD4 70 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 RNF5Q99942 180 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 ST20Q9HBF5 79 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 IGKV3OR2-268A0A0C4DH90 116 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 APOMO95445 188 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 TMEM200BQ69YZ2 307 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 MTURNQ8N3F0 131 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 IFI27L1Q96BM0 104 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 TRGV9Q99603 122 aa8.84□□□□□ -0.99
CD44-201ENST00000263398 A0A1B0GWJ7 208 aa8.83□□□□□ -1
CD44-201ENST00000263398 PMS2P5A8MQ11 134 aa8.83□□□□□ -1
CD44-201ENST00000263398 TMEM178BH3BS89 294 aa8.83□□□□□ -1
CD44-201ENST00000263398 H3BUT2 72 aa8.83□□□□□ -1
CD44-201ENST00000263398 SRSF1Q07955 248 aaKnown RBP eCLIP8.83□□□□□ -1
CD44-201ENST00000263398 ZNF672Q499Z4 452 aaPredicted RBP8.83□□□□□ -1
CD44-201ENST00000263398 JKAMPQ9P055 326 aa8.83□□□□□ -1
CD44-201ENST00000263398 MLNRO43193 412 aa8.83□□□□□ -1
CD44-201ENST00000263398 NDUFA3O95167 84 aa8.83□□□□□ -1
CD44-201ENST00000263398 CACNG7P62955 275 aa8.83□□□□□ -1
CD44-201ENST00000263398 FAM90A2PQ658T7 463 aa8.83□□□□□ -1
CD44-201ENST00000263398 COLCA1Q6ZS62 124 aa8.83□□□□□ -1
CD44-201ENST00000263398 DUX3Q96PT4 197 aa8.83□□□□□ -1
CD44-201ENST00000263398 C2orf88Q9BSF0 95 aa8.83□□□□□ -1
CD44-201ENST00000263398 DPM2O94777 84 aa8.83□□□□□ -1
CD44-201ENST00000263398 MST1LQ2TV78 715 aa8.83□□□□□ -1
CD44-201ENST00000263398 C1orf147Q96MC9 270 aaPredicted RBP8.83□□□□□ -1
CD44-201ENST00000263398 MBNL3Q9NUK0 354 aaKnown RBP8.83□□□□□ -1
CD44-201ENST00000263398 TGFAP01135 160 aa8.83□□□□□ -1
CD44-201ENST00000263398 TCRAP04437 139 aa8.83□□□□□ -1
CD44-201ENST00000263398 C1orf194Q5T5A4 169 aa8.83□□□□□ -1
CD44-201ENST00000263398 SPSB3Q6PJ21 355 aa8.83□□□□□ -1
CD44-201ENST00000263398 C20orf204Q6ZNR8 217 aa8.83□□□□□ -1
CD44-201ENST00000263398 ALKBH7Q9BT30 221 aaPredicted RBP8.83□□□□□ -1
CD44-201ENST00000263398 NPIPB5A8MRT5 1133 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms