RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 TRAV6A0A075B6T7 132 aa16.94■□□□□ 0.3
LSM4-201ENST00000252816 NKX2-1P43699 371 aaPredicted RBP16.94■□□□□ 0.3
LSM4-201ENST00000252816 RPP30P78346 268 aaKnown RBP16.94■□□□□ 0.3
LSM4-201ENST00000252816 STXBP6Q8NFX7 210 aa16.94■□□□□ 0.3
LSM4-201ENST00000252816 GRAMD2BQ96HH9 432 aa16.94■□□□□ 0.3
LSM4-201ENST00000252816 IGKV1OR2-108A0A075B7D4 117 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 KIR2DL5BA0A0G2JN68 375 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 KIR2DL5BA0A0G2JPC4 375 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 K7EQG2 157 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 DEFB131AP59861 70 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 ZFAND6Q6FIF0 208 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 Q6ZWC4 215 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 KIR2DL5AQ8N109 375 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 KIR2DL5BQ8NHK3 375 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 S100ZQ8WXG8 99 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 RNF125Q96EQ8 232 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 NUDT15Q9NV35 164 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 TBC1D24Q9ULP9 559 aa16.93■□□□□ 0.3
LSM4-201ENST00000252816 UBE2CO00762 179 aa16.92■□□□□ 0.3
LSM4-201ENST00000252816 IAH1Q2TAA2 248 aaPredicted RBP16.92■□□□□ 0.3
LSM4-201ENST00000252816 DEFB135Q30KP9 77 aa16.92■□□□□ 0.3
LSM4-201ENST00000252816 LEMD1Q68G75 181 aa16.92■□□□□ 0.3
LSM4-201ENST00000252816 DCANP1Q8TF63 244 aa16.92■□□□□ 0.3
LSM4-201ENST00000252816 STRAPQ9Y3F4 350 aaKnown RBP16.92■□□□□ 0.3
LSM4-201ENST00000252816 BUB3O43684 328 aa16.91■□□□□ 0.3
LSM4-201ENST00000252816 SSSCA1O60232 199 aa16.91■□□□□ 0.3
LSM4-201ENST00000252816 STPG3Q8N7X2 389 aa16.91■□□□□ 0.3
LSM4-201ENST00000252816 THAP8Q8NA92 274 aa16.91■□□□□ 0.3
LSM4-201ENST00000252816 ZBTB8BQ8NAP8 495 aaPredicted RBP16.91■□□□□ 0.3
LSM4-201ENST00000252816 TRGV9Q99603 122 aa16.91■□□□□ 0.3
LSM4-201ENST00000252816 SEC22CQ9BRL7 303 aa16.91■□□□□ 0.3
LSM4-201ENST00000252816 PBDC1Q9BVG4 233 aa16.91■□□□□ 0.3
LSM4-201ENST00000252816 HELTA6NFD8 242 aa16.9■□□□□ 0.3
LSM4-201ENST00000252816 PAX9P55771 341 aa16.9■□□□□ 0.3
LSM4-201ENST00000252816 OR2F1Q13607 317 aa16.9■□□□□ 0.3
LSM4-201ENST00000252816 PSENENQ9NZ42 101 aa16.9■□□□□ 0.3
LSM4-201ENST00000252816 TP53TG1Q9Y2A0 90 aa16.9■□□□□ 0.3
LSM4-201ENST00000252816 STARD9Q9P2P6 4700 aa16.9■□□□□ 0.3
LSM4-201ENST00000252816 CCSO14618 274 aa16.89■□□□□ 0.29
LSM4-201ENST00000252816 SPRY2O43597 315 aa16.89■□□□□ 0.29
LSM4-201ENST00000252816 SMIM8Q96KF7 97 aa16.89■□□□□ 0.29
LSM4-201ENST00000252816 PTTG2Q9NZH5 202 aa16.89■□□□□ 0.29
LSM4-201ENST00000252816 GSKIPQ9P0R6 139 aa16.89■□□□□ 0.29
LSM4-201ENST00000252816 DYNC2H1Q8NCM8 4307 aaKnown RBP16.88■□□□□ 0.29
LSM4-201ENST00000252816 FAM240BA0A1B0GVZ2 78 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 PMS2P5A8MQ11 134 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 SCGB1D2O95969 90 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 H2AFB2P0C5Z0 115 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 ZNF688P0C7X2 276 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 EIF2B2P49770 351 aaKnown RBP16.88■□□□□ 0.29
LSM4-201ENST00000252816 LYZP61626 148 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 OR8G2PQ6IF36 304 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 ACOT7LQ6ZUV0 252 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 ZNF431Q8TF32 576 aaPredicted RBP16.88■□□□□ 0.29
LSM4-201ENST00000252816 RNF183Q96D59 192 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 CSTL1Q9H114 145 aa16.88■□□□□ 0.29
LSM4-201ENST00000252816 RCL1Q9Y2P8 373 aaKnown RBP16.88■□□□□ 0.29
LSM4-201ENST00000252816 SNRPGP15A8MWD9 76 aa16.87■□□□□ 0.29
LSM4-201ENST00000252816 CCNKO75909 580 aa16.87■□□□□ 0.29
LSM4-201ENST00000252816 FABP1P07148 127 aa16.87■□□□□ 0.29
LSM4-201ENST00000252816 AP2S1P53680 142 aaPredicted RBP16.87■□□□□ 0.29
LSM4-201ENST00000252816 ASAH1Q13510 395 aa16.87■□□□□ 0.29
LSM4-201ENST00000252816 SIGLEC15Q6ZMC9 328 aa16.87■□□□□ 0.29
LSM4-201ENST00000252816 MZT2BQ6NZ67 158 aa16.86■□□□□ 0.29
LSM4-201ENST00000252816 TMEM182Q6ZP80 229 aaPredicted RBP16.86■□□□□ 0.29
LSM4-201ENST00000252816 WDR12Q9GZL7 423 aaKnown RBP16.86■□□□□ 0.29
LSM4-201ENST00000252816 TENM2Q9NT68 2774 aa16.85■□□□□ 0.29
LSM4-201ENST00000252816 UPK1BO75841 260 aa16.85■□□□□ 0.29
LSM4-201ENST00000252816 MBPP02686 304 aaPredicted RBP16.85■□□□□ 0.29
LSM4-201ENST00000252816 IFITM3Q01628 133 aa16.85■□□□□ 0.29
LSM4-201ENST00000252816 AKR1C1Q04828 323 aa16.85■□□□□ 0.29
LSM4-201ENST00000252816 ZNF846Q147U1 533 aa16.85■□□□□ 0.29
LSM4-201ENST00000252816 TMEM14EPQ6UXP3 125 aa16.85■□□□□ 0.29
LSM4-201ENST00000252816 RAB40CQ96S21 281 aa16.85■□□□□ 0.29
LSM4-201ENST00000252816 RYR3Q15413 4870 aa16.84■□□□□ 0.29
LSM4-201ENST00000252816 KNCNA6PVL3 124 aa16.84■□□□□ 0.29
LSM4-201ENST00000252816 METTL15P1P0C7V9 234 aa16.84■□□□□ 0.29
LSM4-201ENST00000252816 GATA2P23769 480 aaPredicted RBP16.84■□□□□ 0.29
LSM4-201ENST00000252816 NUP62P37198 522 aaPredicted RBP16.84■□□□□ 0.29
LSM4-201ENST00000252816 C12orf45Q8N5I9 185 aaPredicted RBP16.84■□□□□ 0.29
LSM4-201ENST00000252816 NRN1Q9NPD7 142 aa16.84■□□□□ 0.29
LSM4-201ENST00000252816 FAM25EA8MYX2 175 aa16.83■□□□□ 0.28
LSM4-201ENST00000252816 AGRNO00468 2067 aa16.83■□□□□ 0.28
LSM4-201ENST00000252816 TMEM144Q7Z5S9 345 aa16.83■□□□□ 0.28
LSM4-201ENST00000252816 STHQ8IWL8 128 aa16.83■□□□□ 0.28
LSM4-201ENST00000252816 PFDN2Q9UHV9 154 aa16.83■□□□□ 0.28
LSM4-201ENST00000252816 A0A0J9YWU9 116 aa16.82■□□□□ 0.28
LSM4-201ENST00000252816 C7orf66A4D0T2 115 aa16.82■□□□□ 0.28
LSM4-201ENST00000252816 TSC22D2O75157 780 aa16.82■□□□□ 0.28
LSM4-201ENST00000252816 TAS2R30P59541 319 aa16.82■□□□□ 0.28
LSM4-201ENST00000252816 PSMG4Q5JS54 123 aa16.82■□□□□ 0.28
LSM4-201ENST00000252816 TRPT1Q86TN4 253 aaKnown RBP16.82■□□□□ 0.28
LSM4-201ENST00000252816 SMCO3A2RU48 225 aa16.81■□□□□ 0.28
LSM4-201ENST00000252816 C5orf51A6NDU8 294 aa16.81■□□□□ 0.28
LSM4-201ENST00000252816 CFDP00746 253 aaPredicted RBP16.81■□□□□ 0.28
LSM4-201ENST00000252816 CA1P00915 261 aaPredicted RBP16.81■□□□□ 0.28
LSM4-201ENST00000252816 RRAS2P62070 204 aaPredicted RBP16.81■□□□□ 0.28
LSM4-201ENST00000252816 EWSR1Q01844 656 aaKnown RBP eCLIP16.81■□□□□ 0.28
LSM4-201ENST00000252816 C1orf194Q5T5A4 169 aa16.81■□□□□ 0.28
LSM4-201ENST00000252816 GIG44P09565 113 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms