RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 Q0VG73 95 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 C2orf83Q53S99 150 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 Q56UQ5 140 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 GNB1LQ9BYB4 327 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 COMMD5Q9GZQ3 224 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 GATA4P43694 442 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 TIGITQ495A1 244 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 DMRTA1Q5VZB9 504 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 UNQ5815/PRO19632Q6UWF5 114 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 CIARTQ8N365 385 aaPredicted RBP8.55□□□□□ -1.04
USP28-201ENST00000003302 OR5AN1Q8NGI8 311 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 TMEM68Q96MH6 324 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 TIMM8BQ9Y5J9 83 aaPredicted RBP8.55□□□□□ -1.04
USP28-201ENST00000003302 FBN2P35556 2912 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 RAB7AP51149 207 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 CDSNQ15517 529 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 DNAJC4Q9NNZ3 241 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 IGHV3OR16-8A0A075B7F1 116 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 FXYD7P58549 80 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 C20orf144Q9BQM9 153 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 PRNDQ9UKY0 176 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 LOXP28300 417 aaPredicted RBP8.54□□□□□ -1.04
USP28-201ENST00000003302 KCNS1Q96KK3 526 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 IGLC7A0M8Q6 106 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 HINT1P49773 126 aaPredicted RBP8.54□□□□□ -1.04
USP28-201ENST00000003302 C1orf174Q8IYL3 243 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 PPP1R35Q8TAP8 253 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 SLC35E1Q96K37 410 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 PAXXQ9BUH6 204 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 IGLC2P0DOY2 106 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 IGLC3P0DOY3 106 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 PNKDQ8N490 385 aa8.54□□□□□ -1.04
USP28-201ENST00000003302 H0Y8G0 127 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 PEX7O00628 323 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 DLEU1O43261 78 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 FAM106CPP0CH98 169 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 FAM106AQ4KMX7 169 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 FAM120AOSQ5T036 256 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 OR10X1Q8NGY0 326 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 FLYWCH2Q96CP2 140 aaKnown RBP8.53□□□□□ -1.04
USP28-201ENST00000003302 PGPA6NDG6 321 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 IGLL1P15814 213 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 ZNF714Q96N38 554 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 OSTCQ9NRP0 149 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 BET1LQ9NYM9 111 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 APCSP02743 223 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 RAB31Q13636 194 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 TNFRSF19Q9NS68 423 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.53□□□□□ -1.048e-9■■■■□ 25.3
USP28-201ENST00000003302 hDV102S1A0JD36 115 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 C2orf70A6NJV1 201 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 C17orf100A8MU93 164 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 COX7A2P2O60397 106 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 MYCNOSP40205 109 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 RTL8BQ17RB0 113 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 C10orf113Q5VZT2 155 aa8.53□□□□□ -1.04
USP28-201ENST00000003302 RNASEKQ6P5S7 137 aaKnown RBP8.53□□□□□ -1.04
USP28-201ENST00000003302 PGLYRP4Q96LB8 373 aa8.52□□□□□ -1.05
USP28-201ENST00000003302 LINC00574Q9H8X3 128 aa8.52□□□□□ -1.05
USP28-201ENST00000003302 CSPG4Q6UVK1 2322 aa8.52□□□□□ -1.05
USP28-201ENST00000003302 TEX36Q5VZQ5 186 aa8.52□□□□□ -1.05
USP28-201ENST00000003302 TMEM167BQ9NRX6 74 aa8.52□□□□□ -1.05
USP28-201ENST00000003302 LINC00312Q9Y6C7 94 aa8.52□□□□□ -1.05
USP28-201ENST00000003302 A0A1W2PRE2 83 aa8.52□□□□□ -1.05
USP28-201ENST00000003302 AMY1AP04745 511 aa8.52□□□□□ -1.05
USP28-201ENST00000003302 OR1L8Q8NGR8 309 aa8.52□□□□□ -1.05
USP28-201ENST00000003302 ALKBH7Q9BT30 221 aaPredicted RBP8.52□□□□□ -1.05
USP28-201ENST00000003302 SELENOVP59797 346 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 TMEM183BQ1AE95 376 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 Q8NA96 180 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 OR5B3Q8NH48 314 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 USP9YO00507 2555 aaPredicted RBP8.51□□□□□ -1.05
USP28-201ENST00000003302 TMEM178BH3BS89 294 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 M0R3E3 92 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 SNAI2O43623 268 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 CEACAM4O75871 244 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 C1orf185Q5T7R7 199 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 IGFL4Q6B9Z1 124 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 Q6ZS92 163 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 NF1P21359 2839 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 RPLP1P05386 114 aaKnown RBP8.51□□□□□ -1.05
USP28-201ENST00000003302 COX7A1P24310 79 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 KIR2DS2P43631 304 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 PAFAH1B2P68402 229 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 Q6ZN92 141 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 FBXL15Q9H469 300 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 TCRBV4S1A1TA0A5B7 111 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 DLL1O00548 723 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 CSN3P07498 182 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 DLX6P56179 175 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 TBR1Q16650 682 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 SSX8Q7RTT4 187 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 CORO2AQ92828 525 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 ABHD17AQ96GS6 310 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 OR8B2Q96RD0 313 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 TXNDC17Q9BRA2 123 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 TUBG2Q9NRH3 451 aa8.51□□□□□ -1.05
USP28-201ENST00000003302 IGHV3-35A0A0C4DH35 117 aa8.5□□□□□ -1.05
USP28-201ENST00000003302 hADV38S2A0JD32 116 aa8.5□□□□□ -1.05
USP28-201ENST00000003302 IZUMO1RA6ND01 250 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms